webknossos-libs icon indicating copy to clipboard operation
webknossos-libs copied to clipboard

Use bioformats reader as a fallback and allow more filetypes

Open jstriebel opened this issue 3 years ago • 0 comments

Detailed Description

Affected library: webknossos

Currently, ds.add_layer_from_images() and Dataset.from_images() can use the pims bioformats reader when use_bioformats is explicitly set to true. It would be great to use the bioformats reader as a fallback and for unsupported datatypes anyways. We should check if the listed file suffixes should be monkey-patched to contain all possible ones (see also https://github.com/soft-matter/pims/pull/357), or if a second try using the BioformatsReader directly is more appropriate.

jstriebel avatar Nov 28 '22 09:11 jstriebel