Saber HQ

Dear @weishwu Thank you for bringing this up. We do have plans to include `dorado` to `--basecaller` in the next release. However, I can not give you an exact date...

Hey @MAXINELSX I am so sorry for this late reply. I have no idea why I missed your comment/issue. First, make sure you are using the latest committed version. The...

Would you please provide more information regarding your experiment? What parameters you are using? Are you training a new model or using pre-trained models? My best guess based on the...

> Also, I am encountering one more issue while using your tool, specifically the latest release, NanoSim 3.1.0. I have observed that it hangs during the simulation stage and does...

> Can we use NA12878 data to train the human genome and then use the trained model as a generic human model? To explain further, say I create a custom...

Thanks for reporting this @kainth-amoldeep @kmnip I do not think it is related to the infinite loop bug you mentioned (#184) because, in the transcriptome mode, NanoSim first selects a...

Hey @yanhui09 Sorry for late reply and thank you for providing comprehensive information regarding your run and also looking into the issue in detail. As far as I remember, the...

Dear @npdungca Would you please confirm which version are you using? (I suggest you use the latest committed version from Github by the way). I will publish a new release...

> Hi, Saber. > > I'm using the latest version from github. I just downloaded and installed nanosim last week. I'm getting this error message when running it without the...

Hey @weishwu It looks like that the IndexError happens when NanoSim is trying to calculate the ratio of head sequence length over the head+tail sequence length. This step is needed...