Ryan Layer

Try using our new wrapper smoove https://github.com/brentp/smoove On Tue, Apr 16, 2019 at 4:06 AM Martaprf wrote: > Hi! > I am trying run lumpy express with the follow command:...

Try using our new wrapper smoove https://github.com/brentp/smoove > On Apr 23, 2019, at 7:29 AM, lgmgeo wrote: > > Hi, > I have the same problem with lumpyexpress. It works...

It is. smoove uses lumpy. On Tue, Apr 23, 2019 at 8:11 AM lgmgeo wrote: > Does it mean that Lumpy is not maintained anymore? > > — > You...

It’s petty hard for me to debug issues without data, commands, and details about the runtime environment. > On Apr 23, 2019, at 2:24 PM, lgmgeo wrote: > > Or...

The current flags are the best option. The original wording on that -M option was confusing and our understanding if it evolved. We settled on not using -M and using...

That could just be samblaster removing duplicates. > On Nov 25, 2021, at 12:11 AM, Vincent ***@***.***> wrote: > >  > Many thanks for your suggestion. > > I...

This is typically either a python issue or that your system does not have hexdump. See [#256](https://github.com/arq5x/lumpy-sv/issues/256) I would recommend using the latest lumpy wrapper, smoove. https://github.com/brentp/smoove

Yep https://github.com/arq5x/lumpy-sv/releases On Wed, Nov 11, 2020 at 8:17 AM Grammatikati Konstantin < [email protected]> wrote: > Hello, thanks for great tool. > > Can we get lumpy-sv.tar.gz like for all...

We follow the spec. So the VCF is 1 based and the bEDPE is zero based. On Fri, Apr 9, 2021 at 11:18 AM Andrew McPherson ***@***.***> wrote: > Apologies...

That is not a know bug. Do you have any sense of where it subtracts 1? On Thu, Oct 19, 2023 at 10:59 PM Bart Grantham ***@***.***> wrote: > Hi,...