pytorch_sparse
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diffrent behavior between cpu and cuda
when the cuda devices are invisible, my program runs well. but when the cuda devices are available, it reports the error
Traceback (most recent call last):
File "/home/boltzmachine/THG/train.py", line 10, in <module>
from models.simple import Simple, Share
File "/home/boltzmachine/THG/models/simple.py", line 5, in <module>
from .GNN import DenseGatedRGCN
File "/home/boltzmachine/THG/models/GNN.py", line 10, in <module>
from torch_geometric.nn.inits import glorot, zeros
File "/home/boltzmachine/miniconda3/envs/THG/lib/python3.7/site-packages/torch_geometric/__init__.py", line 5, in <module>
import torch_geometric.data
File "/home/boltzmachine/miniconda3/envs/THG/lib/python3.7/site-packages/torch_geometric/data/__init__.py", line 1, in <module>
from .data import Data
File "/home/boltzmachine/miniconda3/envs/THG/lib/python3.7/site-packages/torch_geometric/data/data.py", line 8, in <module>
from torch_sparse import coalesce, SparseTensor
File "/home/boltzmachine/miniconda3/envs/THG/lib/python3.7/site-packages/torch_sparse/__init__.py", line 15, in <module>
f'{library}_{suffix}', [osp.dirname(__file__)]).origin)
AttributeError: 'NoneType' object has no attribute 'origin'
I use torch 1.7.0 and cu101
I uninstalled torch-sparse repeatedly until there's nothing install
and I installed by
pip install torch-sparse -f https://pytorch-geometric.com/whl/torch-1.7.0+cu101.html --no-cache-dir
pip install torch-scatter -f https://pytorch-geometric.com/whl/torch-1.7.0+cu101.html --no-cache-dir
pip install torch-cluster -f https://pytorch-geometric.com/whl/torch-1.7.0+cu101.html --no-cache-dir
pip install torch-spline-conv -f https://pytorch-geometric.com/whl/torch-1.7.0+cu101.html --no-cache-dir
pip --no-cache-dir install torch-geometric
It seems that there's no *.so of cuda in ~/miniconda3/envs/THG/lib/python3.7/site-packages/torch/cuda/
__init__.py _diag_cpu.so _metis_cpu.so _saint_cpu.so _spspmm_cpu.so bandwidth.py convert.py index_select.py metis.py padding.py rw.py select.py storage.py utils.py
__pycache__ _ego_sample_cpu.so _relabel_cpu.so _sample_cpu.so _version_cpu.so cat.py diag.py masked_select.py mul.py permute.py saint.py spmm.py tensor.py
_convert_cpu.so _hgt_sample_cpu.so _rw_cpu.so _spmm_cpu.so add.py coalesce.py eye.py matmul.py narrow.py reduce.py sample.py spspmm.py transpose.py
One possible reason is that I am using a computer cluster. In my local environment, there is no cuda available until I submit a job by slurm
The *_cuda.so files should be available nonetheless, even if there is no GPU available until a job is submitted. I therefore think that the issue is that installing from wheels fails for you. How long does the installation take? Can you try again with:
pip install --no-index torch-scatter -f https://pytorch-geometric.com/whl/torch-1.7.0+cu101.html