rsnps
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ropensci
Release rsnps 0.6.1
Prepare for release (working on dev branch):
- [x]
git pull - [x] Check current CRAN check results
- [x] Polish NEWS
- add in issue numbers
- [x]
devtools::build_readme() - [x]
urlchecker::url_check() - [x]
devtools::check(remote = TRUE, manual = TRUE)
── R CMD check results ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── rsnps 0.5.1 ────
Duration: 2m 12.7s
0 errors ✔ | 0 warnings ✔ | 0 notes ✔
- [x]
devtools::check_win_devel()- ok - https://win-builder.r-project.org/G3s3tkejXQQB/
- [x]
rhub::check_for_cran() - [x]
revdepcheck::revdep_check(num_workers = 4)
- ── INSTALL ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 2 versions ──
Installing CRAN version of rsnps
Installing DEV version of rsnps
── CHECK ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 1 packages ──
[0/1] 00:10:05 | ETA: ?s | (1) appreci8R [I]OK: 1
BROKEN: 0
Total time: 10 min
-
[x] Update
cran-comments.md -
[x] Update vignette by running
vignettes/precompile.R. -
[x] update codemeta.json using
codemetar::write_codemeta('.')(from within project folder on dev branch) -
[x]
git push -
[x] Tag release
-
[ ] Bump dev version
Submit to CRAN:
- [x] merge dev into master
~* [ ]
usethis::use_version('patch')~ - [x]
devtools::submit_cran() - [x] Approve email
Wait for CRAN...
- [ ] Accepted :tada:
- [ ]
git push - [ ]
usethis::use_github_release() - [ ]
usethis::use_dev_version() - [ ]
git push
Apparently new release was not accepted because the resubmission did not have the release number incremented as stated in "Updates to previously-published packages must have an increased version. Increasing the version number at each submission reduces confusion so is preferred even when a previous submission was not accepted." https://cran.r-project.org/web/packages/policies.html Did not received any info about it being archived, only
"To: Julia Gustavsen [email protected] Cc: CRAN [email protected] References: [email protected] [email protected] CADcfdY=7E6j_Z-3CDU2jbOt0_4hjXXOYVfmN0PAER2P-8qcnSA@mail.gmail.com From: Uwe Ligges [email protected] Organization: Fakultät Statistik, Technische Universität Dortmund In-Reply-To: CADcfdY=7E6j_Z-3CDU2jbOt0_4hjXXOYVfmN0PAER2P-8qcnSA@mail.gmail.com Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 8bit
Thanks, on its way to CRAN.
Best, Uwe Ligges "
Received mail from CRAN with things to fix
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[x] Please only single quote package and software names in your description and not every second word. #176
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[x] Please add \value to .Rd files regarding exported methods and explain the functions results in the documentation. #176
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[x] Please write about the structure of the output (class) and also what the output means. (If a function does not return a value, please document that too, e.g. \value{No return value, called for side effects} or similar)
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[x] Missing Rd-tags: ld_search-defunct.Rd: \value LDSearch-defunct.Rd: \value NCBI_snp_query-defunct.Rd: \value NCBI_snp_query2-defunct.Rd: \value tryget.Rd: \value. commit 71903d4
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[x] \dontrun{} should only be used if the example really cannot be executed (e.g. because of missing additional software, missing API keys, ...) by the user. That's why wrapping examples in \dontrun{} adds the comment ("# Not run:") as a warning for the user. Does not seem necessary. Please replace \dontrun with \donttest. #177
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[x] Please unwrap the examples if they are executable in < 5 sec, or replace dontrun{} with \donttest{}. #177
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[x] Please add small executable examples in your Rd-files to illustrate the use of the exported function but also enable automatic testing.
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[x] Some code lines in examples are commented out. Please never do that. #177
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[x] Ideally find toy examples that can be regularly executed and checked. Lengthy examples (> 5 sec), can be wrapped in \donttest{}.
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[x] Examples in comments in: read_users.Rd
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[x] Please fix and resubmit.
Prepare for release (working on dev branch):
- [x]
git pull - [x] Check current CRAN check results
- [x] Polish NEWS - add in issue numbers
- [x]
devtools::build_readme() - [x]
urlchecker::url_check() - [x]
devtools::check(remote = TRUE, manual = TRUE)
── R CMD check results ──────────────────────────────────────────────────────────────────────────────────── rsnps 0.6.2 ────
Duration: 12m 51.6s
❯ checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Julia Gustavsen <[email protected]>’
New submission
Package was archived on CRAN
CRAN repository db overrides:
X-CRAN-Comment: Archived on 2023-07-09 for policy violation.
On Internet access.
❯ checking top-level files ... NOTE
Non-standard file/directory found at top level:
‘fix_cran.txt’
❯ checking examples ... NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
download_users 10.840 0.461 144.239
read_users 8.692 0.374 77.660
fetch_genotypes 4.838 0.286 72.649
users 3.958 0.221 68.745
allgensnp 3.116 0.033 296.299
ncbi_snp_query 0.643 0.040 13.008
allphenotypes 0.126 0.011 7.634
0 errors ✔ | 0 warnings ✔ | 3 notes ✖
-
[ ]
devtools::check_win_devel() -
[ ]
rhub::check_for_cran() -
~[ ]
revdepcheck::revdep_check(num_workers = 4)~ no longer on cran -
[ ] Update
cran-comments.md -
[ ] Update vignette by running
vignettes/precompile.R. -
[ ] update codemeta.json using
codemetar::write_codemeta('.')(from within project folder on dev branch) -
[ ]
git push -
[ ] Tag release
-
[ ] Bump dev version
Submit to CRAN:
- [] merge dev into master
~* [ ]
usethis::use_version('patch')~ - [ ]
devtools::submit_cran() - [ ] Approve email
Wait for CRAN...
- [ ] Accepted :tada:
- [ ]
git push - [ ]
usethis::use_github_release() - [ ]
usethis::use_dev_version() - [ ]
git push