robertwhbaldwin

it turns out some of the bam files were generated using R1 and R1 instead of R1 and R2 files. so we got half the coverage. And no SV obviously...

(base) robertbaldwin@system76-pc:~/tb_test/TB/calc_depth_bowtie_M.tb$ cd tbdb (base) robertbaldwin@system76-pc:~/tb_test/TB/calc_depth_bowtie_M.tb/tbdb$ ls tbdb.errlog.txt There's nothing in the folder other than the error log

nevermind it turns out that the begin and end coords were mixed up as you can see it should have been [(2, 1234)]