Pyorerun

We can rerun c3d files and display their original content. And also animate biorbd models from the pyomeca organization.

conda install -c conda-forge pyorerun rerun-sdk=0.24.1 pip install trc-data-reader # for .trc file support conda install opensim-org::opensim # not a mandatory dependency conda install -c conda-forge biobuddy=0.2.0 # not a mandatory dependency

Rerun .c3d - As simple as that

import pyorerun as prr

prr.c3d("example.c3d")

https://github.com/pyomeca/pyorerun/assets/40755537/3cdd39f6-d88d-4891-8ffd-d14c93a9c94e

NOTE: Only handle markers, force plates, floor for now

Notebook demo

https://github.com/pyomeca/pyorerun/assets/40755537/c9448d69-c891-4362-821b-68449684eb64

Rerun Biorbd Models

from pyorerun import BiorbdModel, PhaseRerun

nb_frames = 10
nb_seconds = 0.1
t_span = np.linspace(0, nb_seconds, nb_frames)

model = BiorbdModel("models/Wu_Shoulder_Model_kinova_scaled_adjusted_2.bioMod")
q = np.zeros((model.model.nbQ(), nb_frames))

viz = PhaseRerun(t_span)
viz.add_animated_model(model, q)
viz.rerun("msk_model")

https://github.com/pyomeca/pyorerun/assets/40755537/9341707a-4f44-4dbd-8ece-9a16e1500e9a

Play with joint DoFs q, Live.

from pyorerun import LiveModelAnimation


model_path = "models/Wu_Shoulder_Model_kinova_scaled_adjusted_2.bioMod"
animation = LiveModelAnimation(model_path, with_q_charts=True)
animation.rerun()

From source

conda install -c conda-forge ezc3d rerun-sdk=0.24 trimesh numpy biorbd pyomeca tk imageio imageio-ffmpeg

if you want to use the OpenSim, you also need to install separately: conda install -c opensim-org::opensim

if you want to use the BioBuddy, you also need to install separately: conda install -c conda-forge biobuddy=0.2.0 or pip install biobuddy==0.2.0

if you want to use the .trc file support, you also need to install separately: pip install trc-data-reader

Then, ensure it is accessible in your Python environment by installing the package:

pip install . or python setup.py install

On Linux

Rerun should work out-of-the-box on Mac and Windows, but on Linux, you need first to run:

sudo apt-get -y install \
    libclang-dev \
    libatk-bridge2.0 \
    libfontconfig1-dev \
    libfreetype6-dev \
    libglib2.0-dev \
    libgtk-3-dev \
    libssl-dev \
    libxcb-render0-dev \
    libxcb-shape0-dev \
    libxcb-xfixes0-dev \
    libxkbcommon-dev \
    patchelf

Citing

@software{pierre_puchaud_2024_11449215,
  author       = {Pierre Puchaud, Mickael Begon},
  title        = {pyomeca/pyorerun: CaffeineStrips},
  month        = jun,
  year         = 2024,
  publisher    = {Zenodo},
  version      = {1.2.4},
  doi          = {10.5281/zenodo.11449215},
  url          = {https://doi.org/10.5281/zenodo.11449215}
}

Contributing

Contributions are welcome. I will be happy to review and help you to improve the code.