pymc-examples
pymc-examples copied to clipboard
pymc-devs
Examples of PyMC models, including a library of Jupyter notebooks.
Dim names changed ```python ─────────────────────────────────────────────── Error running examples/case_studies/binning.ipynb ──────────────────────────────────────────────── --------------------------------------------------------------------------- Exception encountered at "In [11]": --------------------------------------------------------------------------- ValueError Traceback (most recent call last) Cell In[11], line 5 3 c1.plot(kind="bar", ax=ax, alpha=0.5)...
Error while finding MAP for the model. ```python ────────────────────────────────── Error running examples/case_studies/probabilistic_matrix_factorization.ipynb ────────────────────────────────── --------------------------------------------------------------------------- Exception encountered at "In [20]": --------------------------------------------------------------------------- NotImplementedError Traceback (most recent call last) Cell In[20], line 2...
Needs port to latest PyMC ```python ──────────────────────────────── Error running examples/mixture_models/marginalized_gaussian_mixture_model.ipynb ───────────────────────────────── --------------------------------------------------------------------------- Exception encountered at "In [2]": --------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) Cell In[2], line 3 1 import...
Needs port to latest PyMC ```python ──────────────────────────────────── Error running examples/mixture_models/dependent_density_regression.ipynb ──────────────────────────────────── --------------------------------------------------------------------------- Exception encountered at "In [2]": --------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) Cell In[2], line 4 2 import...
Something up with the CRS using these versions: ```python rasterio.__version__ # '1.4.2' pyproj.__version__ # '3.7.0' mapclassify.__version__ # '2.8.1' ``` Here is the tracback: ```python ──────────────────────────────────────────── Error running examples/spatial/malaria_prevalence.ipynb ───────────────────────────────────────────── ---------------------------------------------------------------------------...
Would need to be ported to latest PyMC ```python ────────────────────── Error running examples/diagnostics_and_criticism/Diagnosing_biased_Inference_with_Divergences.ipynb ─────────────────────── --------------------------------------------------------------------------- Exception encountered at "In [2]": --------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) Cell In[2], line...
**Notebook Title**: GP-Circular **Notebook URL**: [URL](https://github.com/pymc-devs/pymc-examples/blob/main/examples/gaussian_processes/GP-Circular.ipynb) ## Issue description The notebook is broken, possibly due to new version of PyMC. I advise to follow the link for the source code....
**Notebook title**: Approximate Bayesian Computation **Notebook url**: https://www.pymc.io/projects/examples/en/latest/samplers/SMC-ABC_Lotka-Volterra_example.html ## Issue description The 'Old good Gaussian fit' example runs with no issues, the 'Lotka–Volterra' example fails with: ``` --------------------------------------------------------------------------- _RemoteTraceback Traceback...
# Why & How MvNormal was switched from SVD to Cholesky decomposition by default. This is brittle for many GPs, therefore PyMC > 5.22.0 will defaults Latent GP conditionals to...
File: https://github.com/pymc-devs/pymc-examples/blob/main/examples/pymc3_howto/sampling_callback.ipynb Reviewers: > The sections below may still be pending. If so, the issue is still available, it simply doesn't > have specific guidance yet. Please refer to [this...
