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SWE-agent for coding challenge fails to write patch due to Syntax Error

Open giantbirdicus opened this issue 8 months ago • 5 comments

Describe the bug

SWE-agent works for running hello world tutorial but running the SWE-agent for coding challenges results in syntax error. This syntax error appears to prevent writing to a file so no patch is made.

If I run the same command again immediately after a second time, I get a different error but seems related (E999 Syntax error) except this appears it will loop until all funds in my openai account run out. The command I am running twice is (4.) below in steps to reproduce

first run see the code generated at: 🎬 ACTION
edit 4:4

second run see E999 error.

I thought it could be due to '\n' in the generated code instead of \r\n like this bug; but, I am unsure and I do not have any good ideas at the moment.

Any suggestion would be appreciated as I am stuck.

Steps/commands/code to Reproduce

  1. Followed installation instructions from source and set openai key in .env file
  2. Successfully ran hello world tutorial
  3. Error happens when running the tutorial Using SWE-agent for coding challenges
  4. command used removed the "--actions.apply_patch_locally=True" from the tutorial because patch isn't being generated, I assume from the error below. Added --env.repo.type="local" --problem_statement.type="text_file" but with or without these two error does not change

$ sweagent run --config config/coding_challenge.yaml --problem_statement.path="[path to]/problem.md" --env.repo.path=[path to code challenge] --agent.model.name="gpt-4o" --agent.model.per_instance_cost_limit 3.0 --env.repo.type="local" --problem_statement.type="text_file"

  1. execute 4. twice. the first run and second run output below. second run is manually interrupted because it seemed to keep looping over the syntax error "E999 SyntaxError: unexpected character after line continuation character"

Error message/results

First Run

see attached FirstRun.debug.log for full log. I spelled "firstMissingPositive" from the tutorial but, I can see I did that wrong. I can't see what else is wrong.

            Let's proceed by implementing the `firstMissingPositive` method to solve the problem. We'll ensure the solution runs in O(n) time and uses O(1) auxiliary space. The approach typically involves using  
            the array itself to record the presence of numbers by marking indices.                                                                                                                                  
                                                                                                                                                                                                                    
            I'll start by correcting the method name and implementing the solution.                                                                                                                                 
                                                                                                                                                                                                                    
                                                                                                                                                                                                                    
            🎬 ACTION                                                                                                                                                                                               
            edit 4:4                                                                                                                                                                                                
                def firstMissingPositive(self, nums: List[int]) -> int:                                                                                                                                             
                    n = len(nums)                                                                                                                                                                                   
                    for i in range(n):                                                                                                                                                                              
                        while 1 <= nums[i] <= n and nums[nums[i] - 1] != nums[i]:                                                                                                                                   
                            nums[nums[i] - 1], nums[i] = nums[i], nums[nums[i] - 1]                                                                                                                                 
                    for i in range(n):                                                                                                                                                                              
                        if nums[i] != i + 1:                                                                                                                                                                        
                            return i + 1                                                                                                                                                                            
                    return n + 1                                                                                                                                                                                    
🦖 CRITICAL Traceback:                                                                                                                                                                                              
              + Exception Group Traceback (most recent call last):                                                                                                                                                  
              |   File "/root/python3.11/lib/python3.11/site-packages/starlette/_utils.py", line 76, in collapse_excgroups                                                                                          
              |     yield                                                                                                                                                                                           
              |   File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 174, in __call__                                                                                          
              |     async with anyio.create_task_group() as task_group:                                                                                                                                             
              |   File "/root/python3.11/lib/python3.11/site-packages/anyio/_backends/_asyncio.py", line 772, in __aexit__                                                                                          
              |     raise BaseExceptionGroup(                                                                                                                                                                       
              | ExceptionGroup: unhandled errors in a TaskGroup (1 sub-exception)                                                                                                                                   
              +-+---------------- 1 ----------------                                                                                                                                                                
                | Traceback (most recent call last):                                                                                                                                                                
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/errors.py", line 165, in __call__                                                                                      
                |     await self.app(scope, receive, _send)                                                                                                                                                         
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 173, in __call__                                                                                        
                |     with recv_stream, send_stream, collapse_excgroups():                                                                                                                                          
                |   File "/root/python3.11/lib/python3.11/contextlib.py", line 158, in __exit__                                                                                                                     
                |     self.gen.throw(typ, value, traceback)                                                                                                                                                         
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/_utils.py", line 82, in collapse_excgroups                                                                                        
                |     raise exc                                                                                                                                                                                     
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 175, in __call__                                                                                        
                |     response = await self.dispatch_func(request, call_next)                                                                                                                                       
                |                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                       
                |   File "/root/python3.11/lib/python3.11/site-packages/swerex/server.py", line 48, in authenticate                                                                                                 
                |     return await call_next(request)                                                                                                                                                               
                |            ^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                               
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 153, in call_next                                                                                       
                |     raise app_exc                                                                                                                                                                                 
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 140, in coro                                                                                            
                |     await self.app(scope, receive_or_disconnect, send_no_error)                                                                                                                                   
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/exceptions.py", line 62, in __call__                                                                                   
                |     await wrap_app_handling_exceptions(self.app, conn)(scope, receive, send)                                                                                                                      
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 53, in wrapped_app                                                                                   
                |     raise exc                                                                                                                                                                                     
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 42, in wrapped_app                                                                                   
                |     await app(scope, receive, sender)                                                                                                                                                             
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 714, in __call__                                                                                                
                |     await self.middleware_stack(scope, receive, send)                                                                                                                                             
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 734, in app                                                                                                     
                |     await route.handle(scope, receive, send)                                                                                                                                                      
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 288, in handle                                                                                                  
                |     await self.app(scope, receive, send)                                                                                                                                                          
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 76, in app                                                                                                      
                |     await wrap_app_handling_exceptions(app, request)(scope, receive, send)                                                                                                                        
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 53, in wrapped_app                                                                                   
                |     raise exc                                                                                                                                                                                     
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 42, in wrapped_app                                                                                   
                |     await app(scope, receive, sender)                                                                                                                                                             
                |   File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 73, in app                                                                                                      
                |     response = await f(request)                                                                                                                                                                   
                |                ^^^^^^^^^^^^^^^^                                                                                                                                                                   
                |   File "/root/python3.11/lib/python3.11/site-packages/fastapi/routing.py", line 301, in app                                                                                                       
                |     raw_response = await run_endpoint_function(                                                                                                                                                   
                |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                   
                |   File "/root/python3.11/lib/python3.11/site-packages/fastapi/routing.py", line 212, in run_endpoint_function                                                                                     
                |     return await dependant.call(**values)                                                                                                                                                         
                |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                         
                |   File "/root/python3.11/lib/python3.11/site-packages/swerex/server.py", line 85, in run                                                                                                          
                |     return serialize_model(await runtime.run_in_session(action))                                                                                                                                  
                |                            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                   
                |   File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 406, in run_in_session                                                                                       
                |     return await self.sessions[action.session].run(action)                                                                                                                                        
                |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                        
                |   File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 235, in run                                                                                                  
                |     r = await self._run_normal(action)                                                                                                                                                            
                |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                            
                |   File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 284, in _run_normal                                                                                          
                |     _check_bash_command(action.command)                                                                                                                                                           
                |   File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 113, in _check_bash_command                                                                                  
                |     raise exc                                                                                                                                                                                     
                | swerex.exceptions.BashIncorrectSyntaxError: Error (exit code 2) while checking bash command                                                                                                       
                | 'edit 4:4\n    def firstMissingPositive(self, nums: List[int]) -> int:\n        n = len(nums)\n        for i in range(n):\n            while 1 <= nums[i] <= n and nums[nums[i] - 1] != nums[i]:\n
            nums[nums[i] - 1], nums[i] = nums[i], nums[nums[i] - 1]\n        for i in range(n):\n            if nums[i] != i + 1:\n                return i + 1\n        return n + 1'                              
                | ---- Stderr ----                                                                                                                                                                                  
                | /bin/bash: line 2: syntax error near unexpected token `('                                                                                                                                         
                | /bin/bash: line 2: `    def firstMissingPositive(self, nums: List[int]) -> int:'                                                                                                                  
                |                                                                                                                                                                                                   
                | ---- Stdout ----                                                                                                                                                                                  
                |                                                                                                                                                                                                   
                +------------------------------------                                                                                                                                                               
                                                                                                                                                                                                                    
            During handling of the above exception, another exception occurred:                                                                                                                                     
                                                                                                                                                                                                                    
            Traceback (most recent call last):                                                                                                                                                                      
              File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/errors.py", line 165, in __call__                                                                                            
                await self.app(scope, receive, _send)                                                                                                                                                               
              File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 173, in __call__                                                                                              
                with recv_stream, send_stream, collapse_excgroups():                                                                                                                                                
              File "/root/python3.11/lib/python3.11/contextlib.py", line 158, in __exit__                                                                                                                           
                self.gen.throw(typ, value, traceback)                                                                                                                                                               
              File "/root/python3.11/lib/python3.11/site-packages/starlette/_utils.py", line 82, in collapse_excgroups                                                                                              
                raise exc                                                                                                                                                                                           
              File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 175, in __call__                                                                                              
                response = await self.dispatch_func(request, call_next)                                                                                                                                             
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                             
              File "/root/python3.11/lib/python3.11/site-packages/swerex/server.py", line 48, in authenticate                                                                                                       
                return await call_next(request)                                                                                                                                                                     
                       ^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                                     
              File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 153, in call_next                                                                                             
                raise app_exc                                                                                                                                                                                       
              File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/base.py", line 140, in coro                                                                                                  
                await self.app(scope, receive_or_disconnect, send_no_error)                                                                                                                                         
              File "/root/python3.11/lib/python3.11/site-packages/starlette/middleware/exceptions.py", line 62, in __call__                                                                                         
                await wrap_app_handling_exceptions(self.app, conn)(scope, receive, send)                                                                                                                            
              File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 53, in wrapped_app                                                                                         
                raise exc                                                                                                                                                                                           
              File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 42, in wrapped_app                                                                                         
                await app(scope, receive, sender)                                                                                                                                                                   
              File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 714, in __call__                                                                                                      
                await self.middleware_stack(scope, receive, send)                                                                                                                                                   
              File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 734, in app                                                                                                           
                await route.handle(scope, receive, send)                                                                                                                                                            
              File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 288, in handle                                                                                                        
                await self.app(scope, receive, send)                                                                                                                                                                
              File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 76, in app                                                                                                            
                await wrap_app_handling_exceptions(app, request)(scope, receive, send)                                                                                                                              
              File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 53, in wrapped_app                                                                                         
                raise exc                                                                                                                                                                                           
              File "/root/python3.11/lib/python3.11/site-packages/starlette/_exception_handler.py", line 42, in wrapped_app                                                                                         
                await app(scope, receive, sender)                                                                                                                                                                   
              File "/root/python3.11/lib/python3.11/site-packages/starlette/routing.py", line 73, in app                                                                                                            
                response = await f(request)                                                                                                                                                                         
                           ^^^^^^^^^^^^^^^^                                                                                                                                                                         
              File "/root/python3.11/lib/python3.11/site-packages/fastapi/routing.py", line 301, in app                                                                                                             
                raw_response = await run_endpoint_function(                                                                                                                                                         
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                         
              File "/root/python3.11/lib/python3.11/site-packages/fastapi/routing.py", line 212, in run_endpoint_function                                                                                           
                return await dependant.call(**values)                                                                                                                                                               
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                               
              File "/root/python3.11/lib/python3.11/site-packages/swerex/server.py", line 85, in run                                                                                                                
                return serialize_model(await runtime.run_in_session(action))                                                                                                                                        
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                         
              File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 406, in run_in_session                                                                                             
                return await self.sessions[action.session].run(action)                                                                                                                                              
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                              
              File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 235, in run                                                                                                        
                r = await self._run_normal(action)                                                                                                                                                                  
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^                                                                                                                                                                  
              File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 284, in _run_normal                                                                                                
                _check_bash_command(action.command)                                                                                                                                                                 
              File "/root/python3.11/lib/python3.11/site-packages/swerex/runtime/local.py", line 113, in _check_bash_command                                                                                        
                raise exc                                                                                                                                                                                           
            swerex.exceptions.BashIncorrectSyntaxError: Error (exit code 2) while checking bash command                                                                                                             
            'edit 4:4\n    def firstMissingPositive(self, nums: List[int]) -> int:\n        n = len(nums)\n        for i in range(n):\n            while 1 <= nums[i] <= n and nums[nums[i] - 1] != nums[i]:\n      
            nums[nums[i] - 1], nums[i] = nums[i], nums[nums[i] - 1]\n        for i in range(n):\n            if nums[i] != i + 1:\n                return i + 1\n        return n + 1'                              
            ---- Stderr ----                                                                                                                                                                                        
            /bin/bash: line 2: syntax error near unexpected token `('                                                                                                                                               
            /bin/bash: line 2: `    def firstMissingPositive(self, nums: List[int]) -> int:'                                                                                                                        
                                                                                                                                                                                                                    
            ---- Stdout ----                                                                                                                                                                                        
                                                                                                                                                                                                                                

Second Run

manually stopped. see attached 3c659d.debug.log

🤠 WARN     Your proposed edit has introduced new syntax error(s). Please read this error message carefully and then retry editing the file.                                                                        
                                                                                                                                                                                                                    
            ERRORS:                                                                                                                                                                                                 
                                                                                                                                                                                                                    
            - E999 SyntaxError: unexpected character after line continuation character                                                                                                                              
                                                                                                                                                                                                                    
            This is how your edit would have looked if applied                                                                                                                                                      
            ------------------------------------------------                                                                                                                                                        
            [File: /demo_code_challenge/main.py (4 lines total)]                                                                                                                                                    
            1:from typing import List                                                                                                                                                                               
            2:                                                                                                                                                                                                      
            3:class Solution:                                                                                                                                                                                       
            4:    def firstMissingPositive(self, nums: List[int]) -> int:\n        pass                                                                                                                             
            ------------------------------------------------                                                                                                                                                        
                                                                                                                                                                                                                    
            This is the original code before your edit                                                                                                                                                              
            ------------------------------------------------                                                                                                                                                        
            [File: /demo_code_challenge/main.py (4 lines total)]                                                                                                                                                    
            1:from typing import List                                                                                                                                                                               
            2:                                                                                                                                                                                                      
            3:class Solution:                                                                                                                                                                                       
            4:    def firtMissingPositive(self, nums: List[int]) -> int:                                                                                                                                            
            ------------------------------------------------                                                                                                                                                        
                                                                                                                                                                                                                    
            Your changes have NOT been applied. Please fix your edit command and try again.                                                                                                                         
            DO NOT re-run the same failed edit command. Running it again will lead to the same error.                                                                                                               
                                                                                                                                                                                                                    
                                                                                                                                                                                                                    
            (Open file: /demo_code_challenge/main.py)                                                                                                                                                               
            (Current directory: /demo_code_challenge)                                          

System Information

  • Ubuntu 24.04 LTS (Linux 6.11.0-19-generic)
  • Intel® Xeon® W-2275
  • 64.0 GiB

First run log: FirstRun.debug.log second run log: 3c659d.debug.log

Checklist

  • [x] I'm running with the latest docker container/on the latest development version (i.e., I ran git pull))
  • [x] I have copied the full command/code that I ran (as text, not as screenshot!)
  • [x] If applicable: I have copied the full log file/error message that was the result (as text, not as screenshot!)
  • [x] I have enclosed code/log messages in triple backticks (docs) and clicked "Preview" to make sure it's displayed correctly.

giantbirdicus avatar Mar 23 '25 23:03 giantbirdicus

Ah, it looks like the coding_challenge config is a bit outdated. In particular, it doesn't use function calling. I probably can only look at that on Wednesday or later, but if you wanna play with it, take the anthropic_filemap.yaml config (which is the default), and modify it a bit to be similar to the coding_challenge config and it should work.

I think there might be a bug in the non-function calling parsing of the edit action (we also use a slightly different one now by default).

klieret avatar Mar 24 '25 00:03 klieret

Wow, thanks for such a quick response :) ! I will attempt to follow your directions and if I am successful I will report back.

giantbirdicus avatar Mar 24 '25 00:03 giantbirdicus

Following your directions, in the coding_challenge.yaml I changed:

parse_function: type: thought_action to:

parse_function: type: function_calling

and as far as I could tell it worked. It populated the function definition, made the tests and saved to disk (after I added .--actions.apply_patch_locally=True back to my command)

I only started playing with this code base today so I do not understand if, and I doubt, this correctly updates coding_challenge.yaml.

To me updating the coding_challenge.yaml should/would be a separate specific ticket, if as you mentioned it is out of date.

So you have helped solved my issue so I will close this ticket and keep exploring this excellent project.

giantbirdicus avatar Mar 24 '25 03:03 giantbirdicus

Great! Let me keep this open though (I might close it for another later but just so I don't forget), because it technically should also work with the thought_action parsing, so there seems to be some problem here somewhere.

Thanks again for the issue and all!

klieret avatar Mar 24 '25 04:03 klieret

From my trajectory file, I get the following output: https://gist.github.com/rambip/91c1947757099e96fa3c9cfafe978d86

I don't know if insert and then a text is supposed to be a correct output. I also don't know how the text is supposed to be formatted / escaped.

The model uses """ to escape a text that contains itself """. I'm not sure it's the cause of the problem, but that's a bug too.

rambip avatar Aug 29 '25 13:08 rambip