Adrian Viehweger

@davmlaw I successfully used cdot bc/ it provides a flat file for transcript mapping, and thus in principle no internet connection to map coordinates from say coding to genomic. However,...

Thank you for your answer @reece ! > Consider installing seqrepo to obviate remote sequence lookups. How does that work? Like, how can I use seqrepo to not lookup sequences...

This worked, thanks @reece @davmlaw !

I get the following error: ``` foldseek convert2fasta queryDB_ss queryDB_ss.fasta convert2fasta queryDB_ss queryDB_ss.fasta MMseqs Version: a4983ce31e6e006a29d9d9330ce9f826cd555d3e Use header DB false Verbosity 3 Database queryDB_ss needs header information ```

Is it possible to reverse this, ie, from the states generate the 3D structure? As VAEs are generative models, "something" should come out when you decode the states. Is this...

Hi, are these alignments already available using the command line tool @martin-steinegger , eg to visualise/ superimpose the 3D models of a pair of proteins?

@martin-steinegger I get 12 coords in one line; I have not been able to figure out which 3 correspond to translation and which 9 to rotation. I want to feed...

If anyone stumbles upon this: The first 3 entries are translation, the remaining ones rotation, so this `query ref 4.711E-01 59.289 21.504 63.313 -0.707 -0.706 0.041 -0.695 0.704 0.151 -0.135...

@martin-steinegger the conda recipe is still affected from this

yes, that one works :)