bakta

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AMRFinderPlus database not installed!

1

I keep getting this error: `ERROR: AMRFinderPlus database not installed! Please, install AMRFinderPlus's internal database by executing: 'amrfinder_update --database /amrfinderplus-db'. This must be done only once.` I have tried to...

dfeistel3

Exception: diamond error! error code: -6

10

Hi @oschwengers , thanks for this tool! excited to use it on my MAGs dataset. Bakta v1.5.0 was installed with conda and I ran into a similar issue as #105...

Ahmed-Shibl

Let's try if [Pyrodigal](https://github.com/althonos/pyrodigal) might be a suitable, faster and most important actively maintained successor to Prodigal.

oschwengers

add link to the Galaxy bakta tool

5

Great tool! :)

bgruening

use ARMFIDER_DB env var to locate armfinder databases

2

Hello armfinder can use n environnement variable to locate the armfinder database. I think it would be a good idea if `bakta/utils.py` can use this one to in order to...

EricDeveaud

'SQL error!', IndexError('tuple index out of range')

10

So, here I am with this error which I do not know how to solve. I recently installed Bakta (using conda, but had to use `nanoporetech` channel to install few...

prekijpatel

Option to Skip the AMR detection step

11

**Is your feature request related to an existing issue or bug?** Briefly reference any existing issues this is related to. I run my file and got: Traceback (most recent call...

abelTan131

Bakta neither generated circular genome plots nor error messages for running circos command

4

**Describe the bug** Bakta (Version: 1.9.2) neither generated circular genome annotation plots nor error messages for `circos` command. I manually executed the following `circos` command and encountered some error messages....

1996xjm

DeepSig could not be executed! Please make sure DeepSig is installed and executable

1

Hello, I've installed Bakta using Conda with Python 3.8. Deepsig has been installed but I still have the Deepsig error: ``` > bakta --db /home/bakta/db --genus klebsiella --gram - --threads...

daisy238

origin of replication detection not match Ori-Finder web server

1

Hi Bakta developers! Thank you for a great tool for plasmid and bacterial genome annotation! I am using Bakta specifically to annotate the origin of replication. In some of my...

Jigyasa3