Wei Ouyang

Results 197 comments of Wei Ouyang

FYI: `zarr-python` and `numcodecs` are compiled into WASM and available as modules in Pyodide after [this PR](https://github.com/iodide-project/pyodide/pull/938). [Click here to try a live demo](https://notebook.imjoy.io/?ipynb=%257B%2522path%2522%253A%2522Untitled.ipynb%2522%252C%2522name%2522%253A%2522Untitled.ipynb%2522%252C%2522content%2522%253A%257B%2522cells%2522%253A%255B%257B%2522metadata%2522%253A%257B%2522trusted%2522%253Atrue%257D%252C%2522cell_type%2522%253A%2522code%2522%252C%2522source%2522%253A%2522import%2520zarr%255Cnz%2520%253D%2520zarr.zeros%2528%252810000%252C%252010000%2529%252C%2520chunks%253D%25281000%252C%25201000%2529%252C%2520dtype%253D%27i4%27%2529%255Cnz%2522%252C%2522execution_count%2522%253A1%252C%2522outputs%2522%253A%255B%257B%2522output_type%2522%253A%2522stream%2522%252C%2522text%2522%253A%2522%252Flib%252Fpython3.8%252Fsite-packages%252Fnumpy%252Fma%252Fcore.py%253A4467%253A%2520SyntaxWarning%253A%2520%255C%2522is%255C%2522%2520with%2520a%2520literal.%2520Did%2520you%2520mean%2520%255C%2522%253D%253D%255C%2522%253F%255Cn%2520%2520if%2520self.shape%2520is%2520%2528%2529%253A%255Cn%2522%252C%2522name%2522%253A%2522stderr%2522%257D%252C%257B%2522output_type%2522%253A%2522execute_result%2522%252C%2522execution_count%2522%253A1%252C%2522data%2522%253A%257B%2522text%252Fplain%2522%253A%2522%253Czarr.core.Array%2520%252810000%252C%252010000%2529%2520int32%253E%2522%257D%252C%2522metadata%2522%253A%257B%257D%257D%255D%257D%252C%257B%2522metadata%2522%253A%257B%2522trusted%2522%253Atrue%257D%252C%2522cell_type%2522%253A%2522code%2522%252C%2522source%2522%253A%2522%2522%252C%2522execution_count%2522%253Anull%252C%2522outputs%2522%253A%255B%255D%257D%255D%252C%2522metadata%2522%253A%257B%2522kernelspec%2522%253A%257B%2522name%2522%253A%2522python3%2522%252C%2522display_name%2522%253A%2522Python%25203%2522%252C%2522language%2522%253A%2522python%2522%257D%257D%252C%2522nbformat%2522%253A4%252C%2522nbformat_minor%2522%253A2%257D%257D) with Pyodide + zarr running completely...

> It looks like Pyodide is including Zarr & Numcodecs, which is cool to see 😄 I added that two libraries to pyodide a while ago, it works with in-memory...

> Good news, a simple feedback mechanism holds the focus accros the plate. Focusdetection range could be something around +/- 1mm . @beniroquai Great work! Could you explain what we...

The console does not support that, you should use for example: [JupyterLite](https://jupyterlite.readthedocs.io/en/latest/_static/lab/index.html).

Hi @kaczmarj This is Wei from the [BioImage Model Zoo](https://bioimage.io), let us know if you need help in adopting our spec. You are also welcome to join our weekly meeting,...

> Hi There was a discussion with Pete from the QuPath team, but we haven't incorporated into our spec yet, for now the option is to create your own custom...

Hi @haesleinhuepf Sorry to hear that! We are in the process of updating the core library, and the api has changed and the documentation is lagging behind. Previously, we have...