dmriprep icon indicating copy to clipboard operation
dmriprep copied to clipboard

Need a fall-back for cases where no T1w images are available

Open arokem opened this issue 7 years ago • 2 comments

Two kinds of use-cases:

  • Acquisition protocols that don't include T1w.
  • Individual cases within a protocol that don't have that data (e.g., when the quality of the T1 is not good. This is a thing in the HBN dataset).

One option is to register to the FS average brain.

arokem avatar Nov 28 '18 20:11 arokem

One option would be to copy in an mni template or fsaverage brain if there is not T1 image. This will put the data in (roughly) the correct orientation

jyeatman avatar Dec 05 '18 21:12 jyeatman

DIPY has a function to fetch MNI template brains: dipy.data.fetch_mni_template

arokem avatar Dec 12 '18 04:12 arokem