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add anatomical processing from fmriprep

Open akeshavan opened this issue 7 years ago • 1 comments

we need to add anatomical processing if freesurfer hasn't been run. Let's use the same one as fmriprep: https://github.com/poldracklab/fmriprep/blob/master/fmriprep/workflows/base.py#L409-L466

akeshavan avatar Nov 21 '18 20:11 akeshavan

Use smriprep for inspiration. Or simply throw an error and point the user to docker run smriprep.

richford avatar Dec 07 '18 21:12 richford