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Preprocessing did not finish successfully. Errors occurred while processing data from participants: mp0001 (31)

Open roya2022 opened this issue 3 years ago • 1 comments

Hello, I'm trying to work with fmriperp through docker on my local cm runnig this code for one subject;

docker run -ti --rm -v $HOME/sample6/sub-0001:/data:ro\ -v $HOME/output4:/out -v $HOME/freesurfer/license.txt:/opt/freesurfer/license.txt nipreps/fmriprep:latest /data /out participant --participant_label sub-0001 --skip-bids-validation

I faced the first error;

raise BIDSValidationError( bids.exceptions.BIDSValidationError: 'dataset_description.json' is missing from project root. Every valid BIDS dataset must have this file. Example contents of 'dataset_description.json': {"Name": "Example dataset", "BIDSVersion": "1.0.2"}

after that I try to find a json file to fix this program

I used a json file that I've had already from the past of the data of oppenneuro and used this code;

docker run -ti --rm -v $HOME/emocog:/data:ro -v $HOME/output5:/out -v $HOME/freesurfer/license.txt:/opt/freesurfer/license.txt nipreps/fmriprep:latest /data /out participant --participant_labe mp0001 --skip-bids-validation

now I faced this error

Preprocessing did not finish successfully. Errors occurred while processing data from participants: mp0001 (31). Check the HTML reports for details.

I'm trying to learn working with fmriprep and I dont know how much my question is travial or inappropriate I'm really appreciative of your time and consideration

Best, Roya

roya2022 avatar Aug 26 '22 20:08 roya2022

The error I encountered referred to this statement; Check the HTML reports for details. but I couldn't find HTML reports

roya2022 avatar Aug 26 '22 21:08 roya2022

HTML reports are the sub-*.html files in the output directory. If this is still an issue, please open a new one with details of the error.

effigies avatar Nov 21 '23 13:11 effigies