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                                            nhg12

High loss of CCS reads in filtering step

I am guessing it is on SMRTLink settings. I didnt run ccs myself i got the ccs demultiplexed reads from the sequencing company. I filtered the sequences with a minQ=2...

High loss of CCS reads in filtering step

[ccs_report1.csv](https://github.com/benjjneb/dada2/files/10506688/ccs_report1.csv) Do you mean the read score in this file? this is one of the reports as I the other data is too big i cant share it here