LZW decompression - Byte offset out of range

[jmw847]

Version Information:

• TIFF Java Version: 3.0.0
• TIFF Java Source: mvnrepository
• IDE Name & Version: IntelliJ IDEA
• Maven Version: sbt 1.6.2
• Java Version: openjdk version "11.0.15" 2022-04-19
• Platform & OS: Ubuntu 20.04.4 LTS

Expected Results:

A tiff file that is compressed LZW should be decompressed.

Observed Results:

• When I decompress the tiff with ImageMagick and then run the code, the error does not appear.
• With some OME-TIFFS whether compressed with LZW or uncompressed the problem does not occur.
• With other OME TIFFS (LZW compressed) a similar error appears, e.g.:
  • End of data reached without an end of input code, No more remaining bytes to read

Output:

[error] mil.nga.tiff.util.TiffException: Byte offset out of range. Total Bytes: 13670, Byte offset: 13670
[error] 	at mil.nga.tiff.io.ByteReader.setNextByte(ByteReader.java:73)
[error] 	at mil.nga.tiff.FileDirectory.readRaster(FileDirectory.java:1291)
[error] 	at mil.nga.tiff.FileDirectory.readRasters(FileDirectory.java:1220)
[error] 	at mil.nga.tiff.FileDirectory.readRasters(FileDirectory.java:1067)
[error] 	at mil.nga.tiff.FileDirectory.readRasters(FileDirectory.java:1019)
[error] 	at mil.nga.tiff.FileDirectory.readRasters(FileDirectory.java:998)
[error] 	at Main$.delayedEndpoint$Main$1(Main.scala:11)
[error] 	at Main$delayedInit$body.apply(Main.scala:4)
[error] 	at scala.Function0.apply$mcV$sp(Function0.scala:39)
[error] 	at scala.Function0.apply$mcV$sp$(Function0.scala:39)
[error] 	at scala.runtime.AbstractFunction0.apply$mcV$sp(AbstractFunction0.scala:17)
[error] 	at scala.App.$anonfun$main$1(App.scala:76)
[error] 	at scala.App.$anonfun$main$1$adapted(App.scala:76)
[error] 	at scala.collection.IterableOnceOps.foreach(IterableOnce.scala:563)
[error] 	at scala.collection.IterableOnceOps.foreach$(IterableOnce.scala:561)
[error] 	at scala.collection.AbstractIterable.foreach(Iterable.scala:926)
[error] 	at scala.App.main(App.scala:76)
[error] 	at scala.App.main$(App.scala:74)
[error] 	at Main$.main(Main.scala:4)
[error] 	at Main.main(Main.scala)
[error] 	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
[error] 	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[error] 	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[error] 	at java.base/java.lang.reflect.Method.invoke(Method.java:566)

Steps to Reproduce:

1. Create a SBT project with IntelliJ
2. Include libraryDependencies ++= Seq("mil.nga" % "tiff" % "3.0.0") in build.sbt
3. Add the relavant code from below in Main
4. sbt run

Relevant Code:

val input = new File("src/main/resources/test.ome.tif")
val tiffImage = TiffReader.readTiff(input)
val directories = tiffImage.getFileDirectories
val directory = directories.get(0)
val rasters = directory.readRasters

Test Files:

• test.ome.zip