JINJA logic evaluation trims off spacing
Due to the code here when the pipeline is actually created we lose the leading whitespace in front of Website as you can see here.
Easy fix: {% if branded -%} should become {% if branded %} (NB no - at the end).
May get a linting failure from Prettier after that. If so, need to move it onto the same line as the website
eg:
{% if branded %} Website: https://nf-co.re/{{ short_name }}
Slack : https://nfcore.slack.com/channels/{{ short_name }}
Same issue in the README: (there's a space missing towards the end of the line here: https://github.com/nf-core/isoseq/blob/dev/README.md?plain=1#L29)
@maxulysse I don't understand what you mean here.
This line in the template is vanilla markdown without any Jinja tags: https://github.com/nf-core/tools/blob/bc56cdd35077e408a0a7c90ec07fcdff7c2d1f3b/nf_core/pipeline-template/README.md?plain=1#L32
I will close it as it is fixed by #1830, but feel free to reopen if there are still issues.