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Published 20 hours ago • verified publisher icon nf-core

Figure out if Sarek-dev works with Spark

Open asp8200 opened this issue 1 year ago • 2 comments

Description of the bug

Spark may have stopped working after docker.userEmulation was removed in https://github.com/nf-core/sarek/pull/1405.

Command used and terminal output

No response

Relevant files

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System information

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asp8200 avatar Feb 14 '24 12:02 asp8200

Didn't you test it on your side and it worked fine?

FriederikeHanssen avatar Feb 15 '24 12:02 FriederikeHanssen

I just ran nextflow run main.nf -profile test_cache,use_gatk_spark,docker --outdir foo

asp8200 avatar Feb 15 '24 13:02 asp8200