new module: sentieon/bwamem

[Gwennid]

I think it would be good to have a module for sentieon (https://bioconda.github.io/recipes/sentieon/README.html) bwa mem (mapping).

• [x] This module does not exist yet with the nf-core modules list command
• [x] There is no open pull request for this module
• [x] There is no open issue for this module
• [ ] If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

[Gwennid]

Exists as a local module in nf-core/raredisease (https://github.com/nf-core/raredisease/tree/dev/modules/local/sentieon)

[edmundmiller]

https://github.com/seqeralabs/nf-sentieon/blob/717e3b4395eb6076715a1cff089c0f82e4b1d449/workflows/sentieon.nf#L42

[asp8200]

Is anybody actively working on this at the moment?

[Gwennid]

Not that I know of. I can close the issue (as long as the raredisease pipeline is concerned, we are happy with local modules).

[asp8200]

Not that I know of. I can close the issue (as long as the raredisease pipeline is concerned, we are happy with local modules).

We want to implement Sentieon in Sarek, and I think the way to go about that is to first implement nf-modules for the different Sentieon tools. So I think we should keep these issues open in the modules-repo.