nf-sqldb
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nextflow-io
SQL support plugin for Nextflow
Hey, neato plugin. I may have missed it, but I was wondering how I should deal with rapid writes to a database where there's an inconsistent failure where it seems...
Just leaving this here. Waiting for https://github.com/duckdb/duckdb/pull/10011 which will fix #19. Another goal would be to have tests for duckdb and h2, but I'm not familar enough with spock to...
Example: ```nextflow include { sqlInsert } from 'plugin/nf-sqldb' // -- create a table // CREATE TABLE ducks AS SELECT 3 AS age, 'mandarin' AS breed; channel .of(tuple('3', "mandarin")) .sqlInsert( into:...
I kindly request the release of the `nf-bigquery` plugin version 0.0.1 in the Nextflow official plugins repository as it is not currently available.
I am trying to use nf-sqldb to access a local Trino database using the code below with working db config `trino_db`. ``` include { fromQuery } from 'plugin/nf-sqldb' query =...
closes #10 Signed-off-by: Jorge Aguilera
This PR adds Databricks JDBC to the drivers supported by the plugin. See for details [here](https://docs.databricks.com/en/integrations/jdbc/oss.html).
A common attack vector for sql databases is ["injection"](https://xkcd.com/327/) where a string argument is directly injected into an sql query without sanitization. Several dbapis have controls for this, but in...
