NegBio
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ncbi-nlp
:newspaper: High-performance tool for negation and uncertainty detection in radiology reports
main_mm text --metamap=$METAMAP_BIN --output=../test/test.neg.xml ../mimic_cxr/val/p10_p10003502_s51180958_1fa79752-9ddaf5b5-2120ae82-9fec50d6-51f48d1f.txt {'--bllip-model': None, '--cuis': 'examples/cuis-cvpr2017.txt', '--metamap': '/GPUFS/nsccgz_ywang_zfd/caojindong/MetaMap/public_mm_main_2020v2/public_mm/bin/metamap20', '--neg-patterns': 'negbio/patterns/neg_patterns.txt', '--newline_is_sentence_break': False, '--output': '../test/test.neg.xml', '--split-document': False, '--uncertainty-patterns': 'negbio/patterns/uncertainty_patterns.txt', '--verbose': False, '--word_sense_disambiguation': False, 'SOURCE': [], 'SOURCES': ['../mimic_cxr/val/p10_p10003502_s51180958_1fa79752-9ddaf5b5-2120ae82-9fec50d6-51f48d1f.txt'], 'bioc':...
