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verified publisher icon nanoporetech

IOError

Open xyfltq opened this issue 2 months ago • 4 comments

When I was importing the pod5 package into Python to process the pod5 file, I encountered an error that had never appeared before: Failed to remove temporary migration directory: IOError: Cannot delete directory entry '.tmp_pod5_v3_v4_migration_278075279'. Detail: [errno 39] Directory not empty My Pod5 package version is: lib_pod5 0.3.34 pod5 0.3.34

xyfltq avatar Oct 17 '25 10:10 xyfltq

Can you confirm if you are running the commands in a working directory that is nfs mounted?

Thanks,

  • George

0x55555555 avatar Oct 17 '25 10:10 0x55555555

@0x55555555 Certainly, I can confirm that I am running these commands in a working directory mounted via NFS.

xyfltq avatar Oct 18 '25 09:10 xyfltq

Can you test running the command in an non-nfs working directory, and can you also confirm the version of pod5 you are running is definitely 0.3.34?

Thanks,

  • George

0x55555555 avatar Oct 20 '25 06:10 0x55555555

Hi I have the same issue on my nfs working directory with pod5 0.3.34 and lib_pod5 0.3.34.

xianyu0623 avatar Oct 22 '25 07:10 xianyu0623