nanoporetech
pod5 merge finished without errors at 73%
Issue Description
I run the following command which finished successfully but the log says it merged 53 out of 73 files (73%).
pod5 merge -t 32 pod5/*.pod5 -o pod5merged/PAQ83015_bd9104da_d74a1b29.pod5
Logs
Merging reads from 73 files Merging: 73%|#######2 | 53/73 [18:12<06:52, 20.61s/File]
Specifications
- Pod5 Version: 0.3.15
- Python Version: 3.12.3
The same thing happens to me, but it's actually processing all the files. It's probably something with the progress bar (always with the last 20 files).
Check here for more info: https://github.com/nanoporetech/pod5-file-format/issues/131
Same thing happening with me in a conda environment. Progress bar freezes on final 20 files, however, I never seem to be missing any reads (based on read counts from machine and pod5 inspect).
