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Published 20 hours ago • verified publisher icon nanoporetech

Error with POD5 filter

Open lucacozzuto opened this issue 1 year ago • 2 comments

Dear developers, I'm trying to use pod5 filter but I got this error:

pod5 subset test.pod5 -t 1 --summary tes.files --columns barcode --output barcode_subset  

POD5 has encountered an error: 'read_csv() got an unexpected keyword argument 'comment_char''

Not so sure which is the problem.

Thanks in advance for your help.

  • Pod5 Version: 0.3.15
  • Python Version: 3.11.1
  • Platform: almalinux

lucacozzuto avatar Aug 26 '24 16:08 lucacozzuto

I'm getting the same issue on my box that requires polars-lts-cpu but it works fine on the one that uses the standard polars. @lucacozzuto are you using the lts version too?

JudoWill avatar Aug 29 '24 13:08 JudoWill

I took it straight from bioconda. The version 0.2.4 seems to work instead.

lucacozzuto avatar Aug 29 '24 14:08 lucacozzuto