Trouble Installing PhyloCSF

[ataylor22]

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Hello Dr. Lin,

I followed the previous steps in the README file, but while running the make command I get the following error:

PhyloCSF$ make make -C lib/CamlPaml reinstall make[1]: Entering directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml' make uninstall make[2]: Entering directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml' ocamlfind remove CamlPaml Removed /home/hamiltonat/.opam/default/lib/CamlPaml/META Removed /home/hamiltonat/.opam/default/lib/CamlPaml make[2]: Leaving directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml' make install make[2]: Entering directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml' ocamlbuild -cflag '-unsafe-string' -use-ocamlfind CamlPaml.cma CamlPaml.cmxa Finished, 72 targets (72 cached) in 00:00:02. ocamlfind install CamlPaml META _build/CamlPaml.cmi _build/CamlPaml.cma _build/CamlPaml.cmxa _build/CamlPaml.a Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.a Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.cmxa Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.cma Installed /home/hamiltonat/.opam/default/lib/CamlPaml/CamlPaml.cmi Installed /home/hamiltonat/.opam/default/lib/CamlPaml/META make[2]: Leaving directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml' make[1]: Leaving directory '/home/hamiltonat/PhyloCSF/lib/CamlPaml' make -C src clean make[1]: Entering directory '/home/hamiltonat/PhyloCSF/src' rm -f *~ ocamlbuild -cflag '-unsafe-string' -clean Finished, 0 targets (0 cached) in 00:00:00. 00:00:00 0 (0 ) STARTING -------- |make[1]: Leaving directory '/home/hamiltonat/PhyloCSF/src' make -C src make[1]: Entering directory '/home/hamiltonat/PhyloCSF/src' rm -f ForkMaybe.ml ln -s ForkNo.ml ForkMaybe.ml ocamlbuild -cflag '-unsafe-string' -use-ocamlfind PhyloCSF.native

• ocamlfind ocamlc -c -unsafe-string -g -package batteries -package CamlPaml -pp ocaml+twt -o PhyloCSF.cmo PhyloCSF.ml File "PhyloCSF.ml", line 424, characters 88-105: Error: Unbound value Lexing.from_input Command exited with code 2. Compilation unsuccessful after building 10 targets (0 cached) in 00:00:03. Makefile:7: recipe for target 'all' failed make[1]: *** [all] Error 10 make[1]: Leaving directory '/home/hamiltonat/PhyloCSF/src' Makefile:8: recipe for target 'PhyloCSF' failed make: *** [PhyloCSF] Error 2

This issue seems similar to #21. Any suggestions?

Thank You

[danielrebib]

Hi, same problem here!