Wouter-Michiel Vierdag comments

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                                            Wouter-Michiel Vierdag

render_shapes() - problem with cmap alpha

Thanks for opening the new issue, given that the reason for this issue has been solved I will be closing this one. Currently we are in the process of going...

Can't plot table annotations on points

Please do

Can't plot table annotations on points

Please check the tests regarding rendering points, in particular related to the categorical as this does plot from tables that annotate points. This is purely in obs though. Are you...

Can't plot table annotations on points

@LucaMarconato Can you please give me a reproducible example or check whether this issue is still valid?

Plotting color instead of by var in table and alpha not respected

Of note, I am testing the multi table branch of spatialdata but this did not have an effect on what the table looks like as far as I can tell.

Plotting color instead of by var in table and alpha not respected

Particularly this part of the code in `render_shapes` is the problem: ``` elif colors.is_color_like(color): logger.info("Value for parameter 'color' appears to be a color, using it as such.") color = color...

(Optional) fast extent computation for large vector data

yes

Question about naming tool/subtool for nf-core module

@LucaMarconato @FloWuenne I still have that code somewhere with this naming.

Refactor Xenium + Visium paths and use better names

@LucaMarconato Please see last comment in #36

omero metadata info used in napari

As far as I can tell most info could be used by Napari, if not by layers then by the LayerList. active (in napari could mean 2 things): viewer.layers[].visible or...