neuronvisio
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20 hours ago •
mattions
mattions
conda create -n neuronvisio_env neuronvisio -c mattions - does not work
Hello,
I have tried to get neuronvisio working. I tried to use the conda method,
conda create -n neuronvisio_env neuronvisio -c mattions
but this is what I get:
(neuronvisio_env) oren.amsalem@bream ~ $ neuronvisio
neuronvisio
NEURON -- Release 7.4 (1351:8f462ea7e030) 2015-07-21
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2015
See http://www.neuron.yale.edu/neuron/credits
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-56217a6d174f> in <module>()
----> 1 from neuronvisio.controls import Controls
/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env/lib/python2.7/site-packages/neuronvisio/controls.py in <module>()
40
41 os.environ['ETS_TOOLKIT'] = 'qt4'
---> 42 from pyface.qt import QtGui, QtCore
43 from PyQt4 import uic
44
/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env/lib/python2.7/site-packages/pyface/qt/__init__.py in <module>()
35 qt_api = 'pyqt'
36 except ImportError:
---> 37 raise ImportError('Cannot import PySide or PyQt4')
38
39 elif qt_api == 'pyqt':
ImportError: Cannot import PySide or PyQt4
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
<ipython-input-1-5e268e4c48ce> in <module>()
----> 1 controls = Controls()
NameError: name 'Controls' is not defined
Thanks, Oren.
Hi Oren,
it looks like you are missing both PySide and PyQt4 packages.
Without them it is not possbile to create the Controls class, because it depends on them.
HIH, Michele
On 29 May 2017 at 07:31, Oren Amsalem [email protected] wrote:
Hello, I have tried to get neuronvisio working. I tried to use the conda method but this is what I get:
(neuronvisio_env) oren.amsalem@bream ~ $ neuronvisio neuronvisio NEURON -- Release 7.4 (1351:8f462ea7e030) 2015-07-21 Duke, Yale, and the BlueBrain Project -- Copyright 1984-2015 See http://www.neuron.yale.edu/neuron/credits
ImportError Traceback (most recent call last)
in () ----> 1 from neuronvisio.controls import Controls /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env/lib/python2.7/site-packages/neuronvisio/controls.py in
() 40 41 os.environ['ETS_TOOLKIT'] = 'qt4' ---> 42 from pyface.qt import QtGui, QtCore 43 from PyQt4 import uic 44 /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env/lib/python2.7/site-packages/pyface/qt/init.py in
() 35 qt_api = 'pyqt' 36 except ImportError: ---> 37 raise ImportError('Cannot import PySide or PyQt4') 38 39 elif qt_api == 'pyqt': ImportError: Cannot import PySide or PyQt4
NameError Traceback (most recent call last)
in () ----> 1 controls = Controls() NameError: name 'Controls' is not defined
Thanks, Oren.
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/mattions/neuronvisio/issues/63, or mute the thread https://github.com/notifications/unsubscribe-auth/AAF39fRNuAqs7mMRChkZf6JB4wWTh4Ecks5r-mZegaJpZM4No8cS .
I understand, but I used your conda envierment
conda create -n neuronvisio_env neuronvisio -c mattions
doesn't it suppose to install all the requirements?
Thanks Michele.
hi @orena1 , yes, it should get all your dependencies.
try from an ipython to do
from pyface.qt import QtGui, QtCore
if that works, your installation of QT should be good.
I've tried to install Neuronvisio on my laptop using the same command (this runs Python 2, so you need conda for python 2.)
After the install I had to set up the NEURONHOME variable like this:
export NEURONHOME=~/.pyenv/versions/miniconda2-latest/envs/neuronvisio_env/share/nrn/
Note that your env will vary.
After I activate the enviroment, I seem to miss NEURON itself. The PyQt4 bit work for me ok.
Consider that I used Neuronvisio last time back in 2012, and then I did not really use it anymore, so I'm not sure everything should work as expected.
Thanks, I tried importing pyqt
ipython
Python 2.7.13 | packaged by conda-forge | (default, May 2 2017, 12:48:11)
Type "copyright", "credits" or "license" for more information.
IPython 5.3.0 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object', use 'object??' for extra details.
In [1]: from pyface.qt import QtGui, QtCore
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-07f741aae0c2> in <module>()
----> 1 from pyface.qt import QtGui, QtCore
/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env/lib/python2.7/site-packages/pyface/qt/__init__.py in <module>()
35 qt_api = 'pyqt'
36 except ImportError:
---> 37 raise ImportError('Cannot import PySide or PyQt4')
38
39 elif qt_api == 'pyqt':
ImportError: Cannot import PySide or PyQt4
I wonder why the conda did not install pyqt correctly.
Fetching package metadata ...........
Solving package specifications: ..........
Package plan for installation in environment /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1:
The following packages will be downloaded:
package | build
---------------------------|-----------------
gstreamer-1.8.0 | 2 3.4 MB conda-forge
ipython-5.4.1 | py27_0 1.0 MB conda-forge
------------------------------------------------------------
Total: 4.4 MB
The following NEW packages will be INSTALLED:
apptools: 4.4.0-py27_0 conda-forge
backports.shutil_get_terminal_size: 1.0.0-py27_1 conda-forge
backports_abc: 0.5-py27_0 conda-forge
bzip2: 1.0.6-1 conda-forge
ca-certificates: 2017.4.17-0 conda-forge
certifi: 2017.4.17-py27_0 conda-forge
configobj: 5.0.6-py27_0
cycler: 0.10.0-py27_0 conda-forge
dbus: 1.10.10-3 conda-forge
decorator: 4.0.11-py27_0 conda-forge
enum34: 1.1.6-py27_1 conda-forge
envisage: 4.5.1-py27_0 conda-forge
expat: 2.1.0-2 conda-forge
fontconfig: 2.12.1-4 conda-forge
freetype: 2.7-1 conda-forge
functools32: 3.2.3.2-py27_1 conda-forge
future: 0.16.0-py27_0 conda-forge
gettext: 0.19.7-1 conda-forge
glib: 2.51.4-0 conda-forge
gst-plugins-base: 1.8.0-0 conda-forge
gstreamer: 1.8.0-2 conda-forge
hdf5: 1.8.17-11 conda-forge
icu: 58.1-1 conda-forge
ipython: 5.4.1-py27_0 conda-forge
ipython_genutils: 0.2.0-py27_0 conda-forge
iv: 19-0 mattions
jpeg: 9b-0 conda-forge
jsoncpp: 0.10.6-1 conda-forge
libffi: 3.2.1-3 conda-forge
libgfortran: 3.0.0-1
libiconv: 1.14-4 conda-forge
libpng: 1.6.28-0 conda-forge
libtiff: 4.0.6-7 conda-forge
libxcb: 1.12-1 conda-forge
libxml2: 2.9.4-4 conda-forge
lzo: 2.06-0
matplotlib: 2.0.2-np112py27_0 conda-forge
mayavi: 4.5.0-np112py27_1 conda-forge
mkl: 2017.0.1-0
ncurses: 5.9-10 conda-forge
neuron: 7.4-py27_0 mattions
neuronvisio: 0.9.1-py27_0 mattions
numexpr: 2.6.2-np112py27_0 conda-forge
numpy: 1.12.1-py27_0
openssl: 1.0.2k-0 conda-forge
pathlib2: 2.2.1-py27_0 conda-forge
pcre: 8.39-0 conda-forge
pexpect: 4.2.1-py27_0 conda-forge
pickleshare: 0.7.3-py27_0 conda-forge
pip: 9.0.1-py27_0 conda-forge
prompt_toolkit: 1.0.14-py27_0 conda-forge
ptyprocess: 0.5.1-py27_0 conda-forge
pyface: 5.1.0-py27_0 conda-forge
pygments: 2.2.0-py27_0 conda-forge
pyparsing: 2.2.0-py27_0 conda-forge
pyqt: 5.6.0-py27_3 conda-forge
pytables: 3.4.2-np112py27_0 conda-forge
python: 2.7.13-1 conda-forge
python-dateutil: 2.6.0-py27_0 conda-forge
pytz: 2017.2-py27_0 conda-forge
qt: 5.6.2-2 conda-forge
readline: 6.2-0 conda-forge
scandir: 1.5-py27_1 conda-forge
setuptools: 33.1.1-py27_0 conda-forge
simplegeneric: 0.8.1-py27_0 conda-forge
singledispatch: 3.4.0.3-py27_0 conda-forge
sip: 4.18-py27_1 conda-forge
six: 1.10.0-py27_1 conda-forge
sqlite: 3.13.0-1 conda-forge
ssl_match_hostname: 3.5.0.1-py27_1 conda-forge
subprocess32: 3.2.7-py27_0 conda-forge
tk: 8.5.19-1 conda-forge
tornado: 4.5.1-py27_0 conda-forge
traitlets: 4.3.2-py27_0 conda-forge
traits: 4.6.0-py27_1 conda-forge
traitsui: 5.1.0-py27_0 conda-forge
vtk: 7.1.0-py27_3 conda-forge
wcwidth: 0.1.7-py27_0 conda-forge
wheel: 0.29.0-py27_0 conda-forge
xorg-libxau: 1.0.8-3 conda-forge
xorg-libxdmcp: 1.1.2-3 conda-forge
xz: 5.2.2-0 conda-forge
zlib: 1.2.11-0 conda-forge
Proceed ([y]/n)? y
Fetching packages ...
gstreamer-1.8. 100% |##############################################################################################################################| Time: 0:00:23 149.75 kB/s
ipython-5.4.1- 100% |##############################################################################################################################| Time: 0:00:08 126.31 kB/s
Extracting packages ...
[ COMPLETE ]|#################################################################################################################################################| 100%
Linking packages ...
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'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/ivocmain.o' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/ivocmain.o'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libIVhines.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libIVhines.la'
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'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libIVhines.so.3' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libIVhines.so.3'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libIVhines.so.3.0.3' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libIVhines.so.3.0.3'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libivoc.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libivoc.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libivoc.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libivoc.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libivoc.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libivoc.so.0'
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'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmemacs.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libmemacs.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmemacs.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libmemacs.so'
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'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmemacs.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libmemacs.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libmeschach.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libmeschach.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libmeschach.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libmeschach.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libneuron_gnu.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libneuron_gnu.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libneuron_gnu.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libneuron_gnu.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrniv.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrniv.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrniv.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrniv.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnmpi.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnmpi.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnmpi.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnmpi.so'
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'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnmpi.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnmpi.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnoc.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnoc.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnoc.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnoc.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnpython.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnpython.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnpython.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libnrnpython.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/liboc.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/liboc.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/liboc.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/liboc.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libocxt.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libocxt.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libocxt.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libocxt.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libreadline.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libreadline.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libreadline.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libreadline.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libscopmath.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libscopmath.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libscopmath.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libscopmath.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsparse13.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsparse13.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsparse13.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsparse13.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsundials.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsundials.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.so.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsundials.so.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.so.0.0.0' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libsundials.so.0.0.0'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.la' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libUnidrawhines.la'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.so' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libUnidrawhines.so'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.so.3' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libUnidrawhines.so.3'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.so.3.0.3' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/libUnidrawhines.so.3.0.3'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nrnconf.h' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/nrnconf.h'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nrnmain.o' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/nrnmain.o'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nrnnoiv.o' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/nrnnoiv.o'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nvkludge.o' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/nvkludge.o'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/ocmain.o' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/ocmain.o'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/ocnoiv.o' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib/ocnoiv.o'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/bbswork.sh' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/bbswork.sh'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/hel2mos1.sh' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/hel2mos1.sh'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/iclass' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/iclass'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/idemo' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/idemo'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/idraw' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/idraw'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/ivoc' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/ivoc'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/memacs' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/memacs'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/mkthreadsafe' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/mkthreadsafe'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/modlunit' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/modlunit'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/mos2nrn' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/mos2nrn'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/mos2nrn2.sh' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/mos2nrn2.sh'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/neurondemo' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/neurondemo'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nocmodl' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nocmodl'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrngui' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrngui'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrniv' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrniv'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrniv_makefile' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrniv_makefile'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnivmodl' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrnivmodl'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnmech_makefile' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrnmech_makefile'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnoc' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrnoc'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnoc_makefile' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrnoc_makefile'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnocmodl' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrnocmodl'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnpyenv.sh' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/nrnpyenv.sh'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/oc' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/oc'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/set_nrnpyenv.sh' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/set_nrnpyenv.sh'
'/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/sortspike' -> '/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin/sortspike'
[ COMPLETE ]|#################################################################################################################################################| 100%
Linking files from /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/lib to /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/cprop.o
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/ivocmain.o
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libIVhines.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libIVhines.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libIVhines.so.3
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libIVhines.so.3.0.3
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libivoc.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libivoc.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libivoc.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libivoc.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmemacs.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmemacs.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmemacs.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmemacs.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libmeschach.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libneuron_gnu.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrniv.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnmpi.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnmpi.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnmpi.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnmpi.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnoc.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libnrnpython.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/liboc.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libocxt.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.so
/home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.so does exist. Removing for linking
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libreadline.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libscopmath.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsparse13.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.so.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libsundials.so.0.0.0
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.la
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.so
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.so.3
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/libUnidrawhines.so.3.0.3
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nrnconf.h
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nrnmain.o
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nrnnoiv.o
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/nvkludge.o
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/ocmain.o
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/lib/ocnoiv.o
Linking files from /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/x86_64/bin to /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/bbswork.sh
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/hel2mos1.sh
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/iclass
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/idemo
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/idraw
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/ivoc
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/memacs
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/mkthreadsafe
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/modlunit
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/mos2nrn
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/mos2nrn2.sh
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/neurondemo
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nocmodl
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrngui
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrniv
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrniv_makefile
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnivmodl
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnmech_makefile
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnoc
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnoc_makefile
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnocmodl
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/nrnpyenv.sh
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/oc
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/set_nrnpyenv.sh
Analyzing file /home/ls/users/oren.amsalem/anaconda2/envs/neuronvisio_env1/bin/sortspike
#
# To activate this environment, use:
# > source activate neuronvisio_env1
#
# To deactivate this environment, use:
# > source deactivate neuronvisio_env1
#
Thanks