brain-segmentation-pytorch

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BakingBrains

ValueError: Sample larger than population or is negative

3

Hello, Running python script cause to an error: ``` reading validation images... Traceback (most recent call last): File "brain-segmentation-pytorch/inference.py", line 184, in main(args) File "brain-segmentation-pytorch/inference.py", line 22, in main loader...

BaseMax

in_channels parameter change causes size mismatch

5

When changing the kwarg (`in_channels`) from 3 to 2, like ``` torch.hub.load('mateuszbuda/brain-segmentation-pytorch', 'unet', in_channels=2, out_channels=1, init_features=32, pretrained=True) ``` this error occurs: ``` ...module.py", line 1044, in load_state_dict raise RuntimeError('Error(s) in...

mparigi

A puzzle about the code

1

Thanks for ur sharing and ur work is really cool! I have a puzzle about ur code in dataset.py , what is ur point in linë 48 and linë 49?...

Agito555

Training on a custom dataset

1

Hi, I am trying to train the network on a small dataset of brain MRI images. I have sliced out the images and masks following the format of your dataset....

Jiyao96

Retraining on own dataset

1

Hi, I retrained your model on my own dataset; However, I see the Dice Loss is 1 because the prediction is totally wrong and the segmented area is really small....

duvi86

how to train on my dataset

5

manvirvirk

Repository is no longer compatible with scipy as of version 1.3 ; this is due to a deprecated call to scipy.misc.toimage See: https://docs.scipy.org/doc/scipy/reference/release.1.3.0.html?highlight=toimage There are two call in logger.py to...

hugues-talbot

IndexError: too many indices for array

3

Hi, I am testing your code and ended up with the following error. My test data has 11 patients with around 800 .tifs (400 images, 400 masks) per patient. I...

gireeshkbogu

while trying to build dockerfile getting this message: manifest for nvidia/cuda:10.0-cudnn7-devel-ubuntu18.04 not found: manifest unknown: manifest unknown

santoshcoder23