Trevor Manz

What file format you have for your gene annotation? The first would be to generate a gene annotation data and use the gene annotation track from higlass: https://docs.higlass.io/data_preparation.html#create-a-gene-annotation-track-file

Notebooks test code with a widget to collect the Tilesets. A collection of tilesets (should be weakrefable), that handles fulfilling requests from the front end. ```py import higlass as hg...

Just other ideas. A tile request "coordinator", that can be shared among tracks. It waits an animation frame to see all the desired tiles, and then dispatches a single server...

> Can someone please provide guidance on how to visualize a Pandas DataFrame with the HiGlass Python API in a Jupyter notebook? There is no official support for loading an...

Relevant PR that benefits from a similar kind of architecture (and ability to drop jupyter-server-proxy): - https://github.com/banesullivan/localtileserver/pull/219

This the goal to visualize a 2D matrix like a heatmap?

There are several tools for visualizing such matrices interactively, beyond higlass-python. First you need to extract the data as a numpy array: ```py import numpy as np import pandas as...

Hi there, please use the latest version of HiGlass Python. You no longer should need to manually install a Jupyter extension. ``` pip install --upgrade --force-reinstall higlass-python ```

We don't currently have the `hg_cmap` utility. Should we add it?

We don't currently have this API. This is really more something for the renderer and not the core schema API.