FacetWP does not show when HTML Minify is enabled

[JeusuDigital]

Hi, I have output a FacetWP like so in a taxonomy category template:

<?php echo do_shortcode('[facetwp facet="facet_name"]'); ?>

When HTML Minify is enabled the Facet does not show any categories, I think this is because HTML minify is stripping out the required comment from FacetWP:

<!--fwp-loop-->

Is there anyway to exclude it from being stripped out?