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Published 20 hours ago • verified publisher icon lambdacasserole

Atoms not displaying

Open Chelsea486MHz opened this issue 8 years ago • 2 comments

Bromine atoms seem to disappear by being rendered over each other.

IUPAC name: tri(3,5-di(2,3,4,5,6-pentabromophenyl)phenyl)amine

Render: https://i.imgur.com/XPZGc05.png

Chelsea486MHz avatar Sep 27 '17 14:09 Chelsea486MHz

This is importantly not the case over at http://opsin.ch.cam.ac.uk/ which means we could potentially fix this by updating Indigo or fiddling with some settings. Thank you for this.

lambdacasserole avatar Nov 12 '17 19:11 lambdacasserole

FYI OPSIN is currently using v1.2.3.r0 of Indigo. Sourire seems to currently be using v1.1.12. The API of Indigo is essentially constant between versions, with the exception that between those versions the package names have been changed to reflect the change in company that is running the Indigo project. I expect it is just a difference in Indigo versions, although the code used by the OPSIN web service to convert SMILES to depictions is here if it's something more subtle.

dan2097 avatar Dec 05 '17 22:12 dan2097