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Napari automatically downsamples image when using sm.pl.gate_finder()

Open MargotCh opened this issue 2 years ago • 3 comments

Dear all,

I am wondering if there is a way load my image with sm.pl.gate_finder() without napari automatically downscaling it when the image is bigger than the maximum texture size of my graphic card allows?

When using napari manually I can use the multiscale functionality like this:

img = io.imread('your_tif.tif') viewer = napari.Viewer() viewer.add_image([img, img[::2,::2]])

as described by @melonora here: Napari does not display full resolution

Is it possible to use a similar approach within the scimap function?

Thanks for your help! Margot

MargotCh avatar Oct 18 '23 13:10 MargotCh

Within napari we are looking to fix this. But the solution in the post could be quickly implemented for now. Let me know if you would like some more information

melonora avatar Oct 18 '23 15:10 melonora

I apologize for missing this issue. For some reason, I have not been receiving notifications for the issues raised in this channel. Does the issue still persist, and would you need help? Thank you.

ajitjohnson avatar Dec 23 '23 03:12 ajitjohnson

I think the issue would still be persisting as the issue is not fixed in the current versions of napari yet. I will pick it up for version 0.5.0, but we are in the release stage of 0.4.19 currently.

melonora avatar Dec 23 '23 10:12 melonora