omnipose

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Conversion of bact_fluor_omnitorch_0 model to .onnx throws error

1

Hello, we are trying to import your models as custom models into the Arivis Vision4D [Cellpose segmenter](https://kb.arivis.com/arivis-vision4d-4.1.1-release-notes-july-2023)(first paragraph) module for some bacteria segmentation. For that we have to convert your...

JensWendt

Platform: Windows 11 Python: 3.10.13 Terminal output: ``` > omnipose GUI ERROR: DLL load failed while importing QtGui: The specified procedure could not be found. GUI dependencies may not be...

JulianoGianlupi

ImportError: cannot import name 'ifft' from 'scipy'

11

Dear omnipose team, Thank you for making your tool available for the community! Following your installation instructions I created a new environment : ``` mamba create -n omnipose-106 'python==3.10.12' pytorch...

romainGuiet

macos omnipose gui make segmentation fault

2

Hello Running omnipose on macos. Installation in a conda env, etc. When opening the gui anr running segmentation with the sample image I got a segmentation fault. I tried to...

mxardre

Hi, I have loaded an image and run a pretrained model and fixed the resulting labeling. However, when going to step 4 for training, this option is inactive:  Any...

danidean

if the channel is blue it might be 3 instead of 2

romainGuiet

Log the validation loss when using CLI while training an omnipose model

1

Looking through the log and the documentation at https://omnipose.readthedocs.io/training.html I do not see how I can access the validation loss when training a new omnipose model. It would be necessary...

lacan

Training fails in Omnipose but works in cellpose

19

When trying to train a cellpose model I am met with the following error right after computing flows Any idea? ``` INFO: Executing command: [cmd.exe /C F:\conda-envs\omnipose-v201\python.exe -W ignore -m...

lacan

Unable to train model

5

Dear Kevin, first of all thanks for making such an amazing tool and all the hard work in Omnipose. I've been trying to switch from cellpose to omnipose and followed...

rvanroey

I trained a 3D model and I tried to evaluate the model on one of the images in the CLI but I got the following error, ```Traceback (most recent call...

sugan89