Mark Keller

Use case: in react app, want to subscribe to X domain changes Current workaround: I figured out how to do this using the underlying higlass API to subscribe to every...

Shape transforms types

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Fixes # #### Background #### Change List - #### Checklist - [ ] Ensure PR works with all demos on the dev.vitessce.io homepage - [ ] Open (draft) PR's into...

SpatialData-related improvements

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**Background** For the motivation behind the SpatialData project, see the [documentation](https://spatialdata.scverse.org) or [paper](https://www.nature.com/articles/s41592-024-02212-x). Vitessce currently supports a subset of SpatialData features, which we plan to expand during the scverse Boston...

Change tables regex

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Fixes # #### Background #### Change List - #### Checklist - [ ] Ensure PR works with all demos on the dev.vitessce.io homepage - [ ] Open (draft) PR's into...

Shape transforms

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Fixes https://github.com/vitessce/vitessce/issues/1838 Towards https://github.com/vitessce/vitessce/issues/1848 #### Background #### Change List - #### Checklist - [ ] Ensure PR works with all demos on the dev.vitessce.io homepage - [ ] Open (draft)...

Zipped zarr improvements

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**User story** **Preferred solution** - [ ] Implement for OME-Zarr, MuData-Zarr, and SpatialData-Zarr - [ ] Implement for Genomic Profiles - see https://github.com/vitessce/vitessce/issues/1856 - [ ] Note Zarr ZipStore support...

Extend `spatialdata.zarr` options

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**User story** The `spatialdata.zarr` only supports a subset of potential options that a user might need. For example, it currently only accepts a single image and label-image. It does not...

**Describe the bug** The README states to run `pnpm run build-demo` but this is not a script that is available from the root package.json. It is only available from `cd...

**User story** We want to ensure the SpatialData loading and rendering works and does not regress over time. **Preferred solution** Add a visual integration test for a configuration that loads...

Support additional types of affine transformations

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**User story** **Preferred solution** ```[tasklist] ### Tasks - [x] Scale - [x] Translate - [ ] Reflection - [ ] Rotate - [ ] Shear ``` Relevant code/resources: - https://en.wikipedia.org/wiki/Affine_transformation...