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小建议,您好!遇到None of the keys entered are valid keys for 'SYMBOL'

Open shengxinxuexi opened this issue 2 years ago • 5 comments
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感谢您提供的优秀工具,用enrichCluster进行富集分析的时候,只能用SYMBOL进行富集,能否增加Keytype =ENTREZID,植物拟南芥用org.At.tair.db时,Keytype =TAIR等多种方式,这样就不用转换ID了,谢谢!

shengxinxuexi avatar Dec 05 '22 02:12 shengxinxuexi

默认就是将SYMBOL转为ENTREZID,此外你可以自己设置id类型,详情见enrichCluster参数说明。尝试重新安装最新版 ClusterGVis。

junjunlab avatar Dec 05 '22 02:12 junjunlab

谢谢!

shengxinxuexi avatar Dec 05 '22 06:12 shengxinxuexi

不好意思,再次打扰您!重新安装最新版后,?enrichCluster,查看enrichCluster参数,没有看到自己设置id类型的方式,麻烦您给点提示,谢谢! object clusterData object, default NULL. type which type to choose for enrichment "BP","MF","CC" or "KEGG". OrgDb the annotation data for enrichment, default NULL. organism the organism name for kegg enrichment,mouse("mmu"), human("hsa"), default NULL. pvalueCutoff pvalueCutoff for enrichment, default 0.05. topn the top enrichment results to extract, default 5. seed the enrichment seed, default 5201314.

shengxinxuexi avatar Dec 05 '22 06:12 shengxinxuexi

说明你没安装成功,先卸载原来的,再安装

junjunlab avatar Dec 05 '22 07:12 junjunlab

谢谢您!问题已解决。

shengxinxuexi avatar Dec 05 '22 10:12 shengxinxuexi