minimap2-rs

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Question: Minimap2 Alignment options

1

Hello! Nice crate, It would be nice to have the ability to build the minimap2 alignment options (i.e `--score-N`) in the same way the MapOpts or IdxOpts are currently implemented....

Sam-Sims

Issues with cloning of aligner

4

Hi @jguhlin, First; thanks again for the great work on this. I'm already finding minimap2-rs *super* useful, and we're looking to use it to include a "raw read" mode in...

rob-p

Question: Can we force a mapping to _not_ have soft-clippings?

2

Hey @jguhlin, Apologies if this is a naive question: I'm wondering if there's a programmatic way to tell the mapper _not_ to allow soft-clippings, and to instead force the alignment...

holtjma

question on interleaved reads mapping

8

hi @jguhlin, In this wrapper, is there a way to use interleaved reads (or forward & reverse reads) as input since I only saw single fasta as input. Thanks, Jianshu

jianshu93

https://github.com/lh3/minimap2/tree/master/python Feature tracking for #63

jguhlin

Large increase in memory usage in latest version

10

Hi @jguhlin, Thanks for all of the recent changes to minimap2-rs. The new builder is much harder to misuse, and with the new index handling, I'm able to get rid...

rob-p

Question: debugging update to latest versions

14

Hi @jguhlin, I'm in the process of updating this dependency for StarPhase, and I've run into some issues. Currently, I'm on version 0.1.16, and I tried updating to the latest...

holtjma

jguhlin

set/unset flag for `mm_mapopt_t`/`mm_idxopt_t`

2

Hi, @jguhlin, It has been two year when I first learned about this repository. Thanks for you great work on rust binding. I noticed now minimap2-sys only support use bitor(|)...

dwpeng