AssertionError when running inference.py

[vegeta41]

Evaluating performance for coronal_pd /home/wzz/miniconda3/envs/vs-net/lib/python3.7/site-packages/numpy/core/fromnumeric.py:3257: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /home/wzz/miniconda3/envs/vs-net/lib/python3.7/site-packages/numpy/core/_methods.py:161: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) Patient 11: nan nan nan nan Traceback (most recent call last): File "inference.py", line 174, in mat_dict={'normalization': np.asarray(normalization)}) File "/home/wzz/project/VS-Net/common/mriutils.py", line 72, in saveAsMat assert img.ndim in [2, 3, 4] AssertionError

how can i fix it？thanks！

[VincyDa]

您在VS-Net上提交的问题和我所遇见的问题一样，想问问您现在是否解决了

[chke097]

@VincyDa Hello, I was replicating this code recently, but there was a problem in downloading the dataset. I could not download it directly from the dataset link in GLOBUS. After many attempts, I was reminded that the download failed. So, have you successfully downloaded the dataset? Can you share it with me?Thank you!

[VincyDa]

好的，已经在github上分享网盘链接，有需要可以去取，但vs-net的代码似乎优点问题，inference.py出现错误，目前我没法解决，作者也并未解答，如果您那边可以解决的话希望可以交流一下

---

发件人: chke097 @.> 发送时间: 2023年3月14日 16:50 收件人: j-duan/VS-Net @.> 抄送: VincyDa @.>; Mention @.> 主题: Re: [j-duan/VS-Net] AssertionError when running inference.py (#1)

@VincyDahttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FVincyDa&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=C1UHMa72i5xBoqgythbJY768q%2BwDYPWylkmHwfd0Dm0%3D&reserved=0 Hello, I was replicating this code recently, but there was a problem in downloading the dataset. I could not download it directly from the dataset link in GLOBUS. After many attempts, I was reminded that the download failed. So, have you successfully downloaded the dataset? Can you share it with me?Thank you!

― Reply to this email directly, view it on GitHubhttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fj-duan%2FVS-Net%2Fissues%2F1%23issuecomment-1467657487&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=qXtLRqNJWIuDJNCdyuM6sMARvcXBX9DyWcoqpQhOXJo%3D&reserved=0, or unsubscribehttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FARJPHZMEW7HYSHEHG7Y5YKDW4AWL5ANCNFSM4KE2QC3A&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=P%2FDOhauqy%2B1WUEId9zX6e%2BJDVhnFd4FCSbot7kGuETU%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>

[chke097]

您好，请问您有数据集下载的原始格式嘛？您分享的是tfrecord格式，如果可以的话，我们可以➕v联系

---- 回复的原邮件 ---- | 发件人 | @.> | | 日期 | 2023年03月14日 16:54 | | 收件人 | @.> | | 抄送至 | @.>@.> | | 主题 | Re: [j-duan/VS-Net] AssertionError when running inference.py (#1) |

好的，已经在github上分享网盘链接，有需要可以去取，但vs-net的代码似乎优点问题，inference.py出现错误，目前我没法解决，作者也并未解答，如果您那边可以解决的话希望可以交流一下

---

发件人: chke097 @.> 发送时间: 2023年3月14日 16:50 收件人: j-duan/VS-Net @.> 抄送: VincyDa @.>; Mention @.> 主题: Re: [j-duan/VS-Net] AssertionError when running inference.py (#1)

@VincyDahttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FVincyDa&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=C1UHMa72i5xBoqgythbJY768q%2BwDYPWylkmHwfd0Dm0%3D&reserved=0 Hello, I was replicating this code recently, but there was a problem in downloading the dataset. I could not download it directly from the dataset link in GLOBUS. After many attempts, I was reminded that the download failed. So, have you successfully downloaded the dataset? Can you share it with me?Thank you!

― Reply to this email directly, view it on GitHubhttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fj-duan%2FVS-Net%2Fissues%2F1%23issuecomment-1467657487&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=qXtLRqNJWIuDJNCdyuM6sMARvcXBX9DyWcoqpQhOXJo%3D&reserved=0, or unsubscribehttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FARJPHZMEW7HYSHEHG7Y5YKDW4AWL5ANCNFSM4KE2QC3A&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=P%2FDOhauqy%2B1WUEId9zX6e%2BJDVhnFd4FCSbot7kGuETU%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>

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[VincyDa]

原格式的正在上传，可以添加微信：ksh17786412206

---

发件人: chke097 @.> 发送时间: 2023年3月14日 20:21 收件人: j-duan/VS-Net @.> 抄送: VincyDa @.>; Mention @.> 主题: Re: [j-duan/VS-Net] AssertionError when running inference.py (#1)

您好，请问您有数据集下载的原始格式嘛？您分享的是tfrecord格式，如果可以的话，我们可以➕v联系

---- 回复的原邮件 ---- | 发件人 | @.> | | 日期 | 2023年03月14日 16:54 | | 收件人 | @.> | | 抄送至 | @.>@.> | | 主题 | Re: [j-duan/VS-Net] AssertionError when running inference.py (#1) |

好的，已经在github上分享网盘链接，有需要可以去取，但vs-net的代码似乎优点问题，inference.py出现错误，目前我没法解决，作者也并未解答，如果您那边可以解决的话希望可以交流一下

---

发件人: chke097 @.> 发送时间: 2023年3月14日 16:50 收件人: j-duan/VS-Net @.> 抄送: VincyDa @.>; Mention @.> 主题: Re: [j-duan/VS-Net] AssertionError when running inference.py (#1)

@VincyDahttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FVincyDa&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=C1UHMa72i5xBoqgythbJY768q%2BwDYPWylkmHwfd0Dm0%3D&reserved=0 Hello, I was replicating this code recently, but there was a problem in downloading the dataset. I could not download it directly from the dataset link in GLOBUS. After many attempts, I was reminded that the download failed. So, have you successfully downloaded the dataset? Can you share it with me?Thank you!

― Reply to this email directly, view it on GitHubhttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fj-duan%2FVS-Net%2Fissues%2F1%23issuecomment-1467657487&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=qXtLRqNJWIuDJNCdyuM6sMARvcXBX9DyWcoqpQhOXJo%3D&reserved=0, or unsubscribehttps://kor01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FARJPHZMEW7HYSHEHG7Y5YKDW4AWL5ANCNFSM4KE2QC3A&data=05%7C01%7C%7C323b7249be054375dd7508db24691cb7%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C638143806112516545%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=P%2FDOhauqy%2B1WUEId9zX6e%2BJDVhnFd4FCSbot7kGuETU%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>

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