jupyterhub-deploy-docker
jupyterhub-deploy-docker copied to clipboard
jupyterhub
build failed "No module named 'conda'"
description
build failed
context:
- no custom environnement variables
- Docker version 20.10.5, build 55c4c88
- docker-compose version 1.29.2, build 5becea4c
how to reproduce
- git clone https://github.com/jupyterhub/jupyterhub-deploy-docker
- mkdir secrets
- echo -e admin admin > secrets/userlist
- generate self signed key/cert:
- openssl genrsa 2048 > server.key
- chmod 400 server.key
- openssl req -new -x509 -nodes -sha256 -days 365 -key server.key -out server.crt
- make build
logs
> make build
Generating postgres password in secrets/postgres.env
fa0f2834b7b97136c8539fc21aaf25fdc9a07b2c14fb6a2a257278654c4b1a6e
jupyterhub-data
jupyterhub-db-data
docker-compose build
hub-db uses an image, skipping
Building hub
Sending build context to Docker daemon 295.4kB
Step 1/9 : ARG JUPYTERHUB_VERSION
Step 2/9 : FROM jupyterhub/jupyterhub-onbuild:$JUPYTERHUB_VERSION
0.9.2: Pulling from jupyterhub/jupyterhub-onbuild
c64513b74145: Pull complete
01b8b12bad90: Pull complete
c5d85cf7a05f: Pull complete
b6b268720157: Pull complete
e12192999ff1: Pull complete
256ccce151e7: Pull complete
f0d04906c48f: Pull complete
3f8d9ed60d29: Pull complete
9a4e3ab6e62d: Pull complete
39d4f72bd19a: Pull complete
Digest: sha256:c44611b52a3a64494ba51cf4f2abb2cbc17ceba325e5fe172be80c6e6c3a5be8
Status: Downloaded newer image for jupyterhub/jupyterhub-onbuild:0.9.2
# Executing 1 build trigger
---> 119c8c9149d7
Step 3/9 : RUN /opt/conda/bin/conda install -yq psycopg2=2.7 && /opt/conda/bin/conda clean -tipsy && /opt/conda/bin/pip install --no-cache-dir jupyterhub-dummyauthenticator dockerspawner==12.0.*
---> Running in 65a57f248a0d
Solving environment: ...working... done
## Package Plan ##
environment location: /opt/conda
added / updated specs:
- psycopg2=2.7
The following packages will be downloaded:
package | build
---------------------------|-----------------
libstdcxx-ng-9.3.0 | hd4cf53a_17 4.0 MB
ca-certificates-2021.5.25 | h06a4308_1 118 KB
libffi-3.2.1 | hf484d3e_1007 52 KB
openssl-1.1.1k | h27cfd23_0 3.8 MB
ncurses-6.2 | he6710b0_1 1.1 MB
libgomp-9.3.0 | h5101ec6_17 378 KB
psycopg2-2.7.6.1 | py37h1ba5d50_0 308 KB
readline-7.0 | h7b6447c_5 392 KB
wheel-0.36.2 | pyhd3eb1b0_0 31 KB
zlib-1.2.11 | h7b6447c_3 120 KB
libpq-11.2 | h20c2e04_0 2.7 MB
pip-21.1.2 | py37h06a4308_0 2.0 MB
_libgcc_mutex-0.1 | main 3 KB
setuptools-52.0.0 | py37h06a4308_0 921 KB
ld_impl_linux-64-2.35.1 | h7274673_9 637 KB
krb5-1.16.4 | h173b8e3_0 1.4 MB
sqlite-3.33.0 | h62c20be_0 2.0 MB
libedit-3.1.20210216 | h27cfd23_1 190 KB
certifi-2021.5.30 | py37h06a4308_0 141 KB
xz-5.2.5 | h7b6447c_0 438 KB
libgcc-ng-9.3.0 | h5101ec6_17 7.8 MB
python-3.7.7 |h191fe78_0_cpython 52.6 MB
_openmp_mutex-4.5 | 1_gnu 22 KB
------------------------------------------------------------
Total: 81.0 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex: 0.1-main
_openmp_mutex: 4.5-1_gnu
krb5: 1.16.4-h173b8e3_0
ld_impl_linux-64: 2.35.1-h7274673_9
libgomp: 9.3.0-h5101ec6_17
libpq: 11.2-h20c2e04_0
psycopg2: 2.7.6.1-py37h1ba5d50_0
The following packages will be UPDATED:
ca-certificates: 2018.4.16-0 conda-forge --> 2021.5.25-h06a4308_1
certifi: 2018.8.13-py36_0 conda-forge --> 2021.5.30-py37h06a4308_0
decorator: 4.3.0-py_0 conda-forge --> 4.3.0-py_0 conda-forge
ipython_genutils: 0.2.0-py_1 conda-forge --> 0.2.0-py_1 conda-forge
jinja2: 2.10-py_1 conda-forge --> 2.10-py_1 conda-forge
libedit: 3.1.20170329-haf1bffa_1 conda-forge --> 3.1.20210216-h27cfd23_1
libffi: 3.2.1-hd88cf55_4 --> 3.2.1-hf484d3e_1007
libgcc-ng: 7.2.0-hdf63c60_3 --> 9.3.0-h5101ec6_17
libstdcxx-ng: 7.2.0-hdf63c60_3 --> 9.3.0-hd4cf53a_17
ncurses: 6.1-hfc679d8_1 conda-forge --> 6.2-he6710b0_1
openssl: 1.0.2o-h470a237_1 conda-forge --> 1.1.1k-h27cfd23_0
pip: 18.0-py36_1 conda-forge --> 21.1.2-py37h06a4308_0
python: 3.6.6-h5001a0f_0 conda-forge --> 3.7.7-h191fe78_0_cpython
readline: 7.0-ha6073c6_4 --> 7.0-h7b6447c_5
setuptools: 39.0.1-py36_0 --> 52.0.0-py37h06a4308_0
sqlite: 3.24.0-h2f33b56_0 conda-forge --> 3.33.0-h62c20be_0
wheel: 0.31.0-py36_0 --> 0.36.2-pyhd3eb1b0_0
xz: 5.2.3-h55aa19d_2 --> 5.2.5-h7b6447c_0
zlib: 1.2.11-ha838bed_2 --> 1.2.11-h7b6447c_3
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working...
done
Traceback (most recent call last):
File "/opt/conda/bin/conda", line 7, in <module>
from conda.cli import main
ModuleNotFoundError: No module named 'conda'
The command '/bin/sh -c /opt/conda/bin/conda install -yq psycopg2=2.7 && /opt/conda/bin/conda clean -tipsy && /opt/conda/bin/pip install --no-cache-dir jupyterhub-dummyauthenticator dockerspawner==12.0.*' returned a non-zero code: 1
ERROR: Service 'hub' failed to build : Build failed
make: *** [build] Error 1
Same as this issue: https://github.com/jupyterhub/jupyterhub-deploy-docker/issues/91
In Dockerfile.jupyterhub the line RUN /opt/conda/bin/conda install -yq psycopg2=2.7 updates the python version from 3.6.6 to 3.7.*. Therefore you will get a similar error as Conda #9672: No module named 'conda' . To fix this issue I added the line RUN echo "python 3.6.*" > /opt/conda/conda-meta/pinned before I installed psycopg2 to pin the python version.
@HiloadProgrammer this worked for me (and apparently 3 others). should i submit a pull request to have the Dockerfile.jupyterhub file updated, or is there another fix in the works?
@HiloadProgrammer this worked for me (and apparently 3 others). should i submit a pull request to have the
Dockerfile.jupyterhubfile updated, or is there another fix in the works?
@nrgpy I see this solution more as a quick fix rather than a permanent solution. Currently I am not working on this issue therefore there is no other fix that I know about.
If you like you can submit this fix.
