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Published 20 hours ago • verified publisher icon ai-med

freesurfer

Open ymli39 opened this issue 6 years ago • 2 comments

Hi, I saw you mentioned in step 5 (Enter the path and name of the MRI volume, use freesurfer to do it using the command: 'mri-convert --conform InputVol OutputVol'). Is this part of the pre-processing step? If I have my own data, do I need to run freesurfer or I can directly test my data?

Thanks,

ymli39 avatar Mar 01 '19 00:03 ymli39

This step seems to convert an original volume image in to an image of iso-tropic resolution of [256 256 256].

ShaodeYuOutlook avatar Apr 14 '19 17:04 ShaodeYuOutlook

Hi,

There is also some global contrast enhancement made during this step. Unfortunately this is not very clear in FreeSurfer documentation.

https://surfer.nmr.mgh.harvard.edu/fswiki/mri_convert

abhi4ssj avatar Sep 19 '19 09:09 abhi4ssj