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Published 20 hours ago • verified publisher icon StevenWingett

Bowtie2 Failing?

Open StevenWingett opened this issue 5 years ago • 1 comments

I suspect sometimes that Bowtie2 fails (e.g. exceeds RAM), but this is not caught by HiCUP. HiCUP proceeds and then generates error messages which appear to be a problem with HiCUP (see attached).

Check this and write code for HiCUP to fail elegantly, if necessary.

Screen Shot 2020-07-06 at 10 12 57 AM 4 1

StevenWingett avatar Jul 07 '20 16:07 StevenWingett

This was mentioned in:

https://github.com/StevenWingett/HiCUP/issues/57#issuecomment-900505087

StevenWingett avatar Aug 19 '21 09:08 StevenWingett