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Hi-C data processing pipeline

HiCUP (Hi-C User Pipeline)

HiCUP is a bioinformatics pipeline for processing Hi-C data.

HiCUP homepage

HiCUP Documentation

What to contribute to the HiCUP codebase? If so, please push updates via GitHub to the "development" branch.

Contact the software author to discuss the software, report bugs or suggest enhancements