imagej-scripting

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Including `ImageJ` gateway

7

See this https://github.com/imagej/imagej-scripting/pull/16 for the detail of the discussion.

hadim

How to reconcile tutorials here with the notebooks in the tutorials repository

8

I am developing a (planned to be) comprehensive set of ImageJ tutorials as (Beaker for now, but hopefully later Jupyter too) notebooks, in the [imagej/tutorials](https://github.com/imagej/tutorials) repository (on the `dev-manual` branch...

ctrueden

Would be nice to add appropriate converters from datasets to R data structures and back, and provide some templates showing this behavior.

hinerm

Some tutorials broken

8

Some tutorials are broken because of the changes in ops signature. See this one for example : https://github.com/imagej/imagej-scripting/blob/master/src/main/resources/script_templates/Tutorials/Simple_Convolution.groovy We should have tests for every script (when possible) but not only....

hadim

Add comments to indicate to users which image to use for each tutorial

3

you think you could add some info in your Ops tutorial scripts regarding which image to open for which tutorial ?? (example : Ops_Threshold_IJ1... make sure to comment in that...

etadobson

Open T1 Head, and run it. There is an exception. Thanks to Aryeh Weiss for reporting this issue!

ctrueden

This component is licensed permissively with BSD, but the scripting-renjin component is licensed GPL because it depends on renjin which is so licensed. We need to remove the scripting-renjin component...

ctrueden