Markus J. Ankenbrand
Markus J. Ankenbrand
We should put a notice in the README, that GWAS_Flow has been superseded by [permGWAS](https://github.com/grimmlab/permGWAS). We can additionally add a badge like this: https://www.repostatus.org/
Hello @iimog, It seems with the newest version of RAXML, v8.2.12, there are alway problems with respect to partition file (no problem with v 8.0 or earlier): RAxML was called...
We use `Gblocks` to filter the alignments in this line: https://github.com/molbiodiv/bcgTree/blob/dceaf223a92679e399aab367ca3ef29f618d94b7/lib/bcgTree.pm#L227 So we are keeping blocks of length at least 4 with at least half the positions being non-gaps (see...
Hello @iimog, Ok no problem, I will use proteome first. Can you also please add fasttree support. I understand that RAxML is the most accurate one but too slow for...
Thanks for the quick response. Can you also please add an mafft option? I tried a 1200 genome collection and the alignment is slow if using muscle. I think this...
I used `checkhelper::find_missing_tags()` to find missing `\value` tags in the Rd files of [`gggenomes`](https://thackl.github.io/gggenomes/) after CRAN rejected the package, because of this reason. Some missing `\value` tags were reported by...
I just realized, that it is possible to run `gggenomes` in webR in the browser :exploding_head: Thanks to [r-universe](https://thackl.r-universe.dev/gggenomes) building a wasm package for us, we can go to the...
### Bug Description When I add a Grid to a new Document and add a Filter for it, this filter is applied in the Grid view within the document, but...
#### Description All tests fail when running napari tests as they throw the following error: `TypeError: add_points() got an unexpected keyword argument 'edge_color'` after changing `edge_color` to `border_color` some tests...