Markus J. Ankenbrand
Markus J. Ankenbrand
This is strange. Can you confirm that this returns a tibble with 6 rows: ```R read_seqs(ex("emales/emales.fna")) ``` If so, can you share your fasta file so I can have a...
Thank you for checking. I can reproduce the problem on my Windows machine. On Linux it works as expected. My first guess, line endings, does not seem to cause the...
Sequences from fasta are internally processed by `gggenomes` via the perl script [exec/seq-len](https://github.com/thackl/gggenomes/blob/master/exec/seq-len). The problem is, that perl is not available on Windows by default. I'm not sure whether it...
Thank you, @Rikkiff and @dmckeow, for documenting your workarounds. I still hope to fix the `read_seqs` function on Windows or at least issue a warning rather than just returning an...
`read_seqs` is implemented in `R` in the latest release (that is also available on CRAN :tada:). So this should no longer be an issue.
Thank you for your response. I'm quite sure, that you are correct, and the error is due to incompatible dependencies. However, I still don't get a working environment with an...
I fixed `Alt+.` for my setup by adding a command which is invoked with the `Alt+.` combination and sends the same escape sequence as `xterm`. See: https://github.com/iimog/hyper/commit/b603f13900b79968f5519f1ee9bbab8f69a22611 Only tested for...
As `IRanges` is a bioconductor package, it might be problematic to have in "Depends" for our planned cran submission.
Hi @Jigyasa3 I just had the same error. In my case updating both ggplot and the dependencies solved the problem: ```R devtools::install_github("thackl/gggenomes") ``` When asked ``` These packages have more...
Hi there :wave: I used to work on an ITS2 database update a couple of years ago, still I'm not an ITS2 expert. Mathias Wolf most certainly is. You can...