John Huddleston

@Valentin-Bio Another possibility is that Snakemake is pulling in older intermediate files into your analysis that were generated before you updated the `skip_diagnostics` setting in the config file. Older versions...

@corneliusroemer Can you confirm that this specific error is still a problem with the recent fix to nextstrain.org's authentication framework?

We just got a +1 for this functionality from @lmoncla since she often has large subdirectories in her top-level flu build directories that she doesn't want to upload during AWS...

We now have a Windows machine that we can use to test the CLI and Docker. I got Nextstrain working with Windows 10 Pro on this machine with only a...

While reviewing @victorlin's [PR for new Windows installation docs](https://github.com/nextstrain/docs.nextstrain.org/pull/81), I had some thoughts about this issue: 1. Asking a Windows user to install the Microsoft C++ Build Tools before they...

> Do we drop --allow-remote-access from nextstrain view or still support it but be unable to give the correct address to users? Yeah, that's a great question where having more...

> keeping `--allow-remote-access` and the 0.0.0.0 behaviour @tsibley Am I right in thinking this just requires deleting [these lines](https://github.com/nextstrain/cli/blob/3f8dc1e807da0b9f9da07f6bfcadfba0d2a8e5e3/nextstrain/cli/command/view.py#L120-L131), [the best_remote_address function](https://github.com/nextstrain/cli/blob/3f8dc1e807da0b9f9da07f6bfcadfba0d2a8e5e3/nextstrain/cli/command/view.py#L199-L223), and the netifaces imports? > removing it and...

> Move away from fauna/rethinkdb for titer data +many for this.

We discussed a couple of options to address this during triage: 1. Reach out to COG-UK group via Slack to see if there are plans to continue submitting to NCBI...

For folks who are interested in this approach to using GISAID data with the modern mpox repo layout, you should run the commands above from inside the `phylogenetic` directory of...