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haddocking
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
In light of future webserver-based workshops dealing with protein-glycan modelling we need to port the tutorial written for HADDOCK3 (https://www.bonvinlab.org/education/HADDOCK3/HADDOCK3-protein-glycan/) to HADDOCK 2.X
tutorial about nanobody-antigen modelling using a combination of AI-derived nanobodies and HADDOCK. The considered case fails with both AlphaFold2 and AlphaFold3. Missing pieces: - link to HADDOCK3 repo examples (will...
a HADDOCK3 tutorial on nanobody antigen modelling using a combination of AI and HADDOCK to model the complex
1. Suggest to bring a mouth for the pymol 2. During the linux session make sure students read about environmental variables, cat, nano (or vim) 3. Encourage students to not...
Check which automatic changes haddock2.4 server does for protein-peptide docking and, if needed, update haddock3 protein-peptide tutorial.
Help users to recognise when smth goes wrong in the run. Not failed run, but possibility of the incorrect results. Make a tutorial-style page with sections presenting different run results,...
This is the tutorial for basic protein-protein docking.
Since there is a new version of powerfit with a report function, the tutorial can be updated
This PR closes issue #745 and updates Chimera commands to ChimeraX
Since there is a new version of the Powerfit webserver, the integrative modelling tutorial can be updated https://www.bonvinlab.org/education/HADDOCK24/RNA-Pol-III-2024/
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Webpage of the Bonvinlab @ Utrecht University and HADDOCK software