gcp-variant-transforms
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Annotation as a Service
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One attractive way to speed up annotation is by creating a service which our pipeline can call to on a per-variant basis. See https://github.com/googlegenomics/variant-annotation/issues/5 for more details about a potential architechure for this service.
If this service gets built, we should use it here instead of our current method of pre-processing VCF files.
A prototype of this idea is implemented in PR #361.