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Published 20 hours ago • verified publisher icon fonsp

Julia 1.12 precompilation not working

Open fonsp opened this issue 7 months ago • 1 comments

Precompilation seems to be unreliable on Julia 1.12.

Issues encountered:

  • [x] Precompilation hanging forever in tests
    • Caused by https://github.com/JuliaLang/julia/issues/58229
      • workaround https://github.com/fonsp/Pluto.jl/pull/3203
  • [ ] Packages sometimes precompile again in the notebook (see screenshot)
  • [ ] Precompilation tests fail, I disabled them on CI currently https://github.com/fonsp/Pluto.jl/commit/c38b42c51b5c2c395cb77c75c5ef4edd3cbc210e

Image

fonsp avatar Apr 12 '25 19:04 fonsp

I wasted a lot of debugging time on https://github.com/JuliaLang/julia/issues/58229 which was causing stuck pidlocks and other stuff. Maybe wait for this issue to be fixed before we continue...

fonsp avatar Apr 25 '25 13:04 fonsp

This is now happening consistently in Julia 1.11 as well 🎃

fonsp avatar Sep 15 '25 08:09 fonsp

To try:

  • Get a consistent setup with a mini package (that I can test in CI)
  • Try a delay after precomp EDIT: no fix
  • DEBUG loading to check cache misses EDIT: no useful output
  • See which 1.11 version broke it and check out the changelog

fonsp avatar Sep 15 '25 14:09 fonsp

It fails consistently with Julia 1.11.6 with an empty .julia/compiled/v1.11 folder when opening the "Images and Arrays" featured notebook.

fonsp avatar Sep 16 '25 13:09 fonsp

I wrote a reproducer script but it did not work on Julia 1.11 and 1.12

bug.zip

i tried with the manifst before and after resolve

fonsp avatar Sep 16 '25 14:09 fonsp

Broken on: 1.11.3, 1.11.6, 1.11.7, 1.12.0-rc2

Working on: 1.10.10

fonsp avatar Sep 16 '25 15:09 fonsp

I modified the Images as Arrays notebook to have:

begin
    ENV["JULIA_DEBUG"] = "loading"
    
    PlutoRunner.Logging.shouldlog(logger::PlutoRunner.PlutoCellLogger, level, _module, _...) = true # https://github.com/fonsp/Pluto.jl/issues/2487
    
	using Colors, ColorVectorSpace, ImageShow, FileIO, ImageIO
	using PlutoUI
	using PlutoTeachingTools
	using HypertextLiteral
end

To properly see logs. Now I get:

Loading object cache file /Users/fons/.julia/compiled/v1.11/Statistics/ERcPL_J6KzS.dylib for Statistics [10745b16-79ce-11e8-11f9-7d13ad32a3b2] Loading object cache file /Users/fons/.julia/compiled/v1.11/FixedPointNumbers/Ple2W_J6KzS.dylib for FixedPointNumbers [53c48c17-4a7d-5ca2-90c5-79b7896eea93] Loading object cache file /Users/fons/.julia/compiled/v1.11/Reexport/bTpYr_J6KzS.dylib for Reexport [189a3867-3050-52da-a836-e630ba90ab69] Loading object cache file /Users/fons/.julia/compiled/v1.11/ColorTypes/db21U_J6KzS.dylib for ColorTypes [3da002f7-5984-5a60-b8a6-cbb66c0b333f] Loading object cache file /Users/fons/.julia/compiled/v1.11/Colors/NKjaT_J6KzS.dylib for Colors [5ae59095-9a9b-59fe-a467-6f913c188581] Loading object cache file /Users/fons/.julia/compiled/v1.11/TensorCore/wqzBb_J6KzS.dylib for TensorCore [62fd8b95-f654-4bbd-a8a5-9c27f68ccd50] Loading object cache file /Users/fons/.julia/compiled/v1.11/ColorVectorSpace/7uC4N_J6KzS.dylib for ColorVectorSpace [c3611d14-8923-5661-9e6a-0046d554d3a4] Rejecting cache file /Users/fons/.julia/compiled/v1.11/ImageShow/76qZM_J6KzS.ji because module Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") is already loaded and incompatible. precompile: deps collected precompile: extensions collected precompile: signalling initialized precompile: circular dep check done precompile: packages filtered precompile: starting precompilation loopdepsmapDict{Base.PkgId, Vector{Base.PkgId}}DictDownloads [f43a241f-c20a-4ad4-852c-f6b1247861c6]Base.PkgId1ArgTools [0dad84c5-d112-42e6-8d28-ef12dabb789f]2LibCURL [b27032c2-a3e7-50c8-80cd-2d36dbcbfd21]3NetworkOptions [ca575930-c2e3-43a9-ace4-1e988b2c1908]ImageCore [a09fc81d-aa75-5fe9-8630-4744c3626534]Base.PkgId1ColorVectorSpace [c3611d14-8923-5661-9e6a-0046d554d3a4]2Colors [5ae59095-9a9b-59fe-a467-6f913c188581]3FixedPointNumbers [53c48c17-4a7d-5ca2-90c5-79b7896eea93]4MappedArrays [dbb5928d-eab1-5f90-85c2-b9b0edb7c900]5MosaicViews [e94cdb99-869f-56ef-bcf0-1ae2bcbe0389]6OffsetArrays [6fe1bfb0-de20-5000-8ca7-80f57d26f881]7PaddedViews [5432bcbf-9aad-5242-b902-cca2824c8663]8PrecompileTools [aea7be01-6a6a-4083-8856-8a6e6704d82a]9Reexport [189a3867-3050-52da-a836-e630ba90ab69]ImageShow [4e3cecfd-b093-5904-9786-8bbb286a6a31]Base.PkgId1Base64 [2a0f44e3-6c83-55bd-87e4-b1978d98bd5f]2ColorSchemes [35d6a980-a343-548e-a6ea-1d62b119f2f4]3FileIO [5789e2e9-d7fb-5bc7-8068-2c6fae9b9549]4ImageBase [c817782e-172a-44cc-b673-b171935fbb9e]5ImageCore [a09fc81d-aa75-5fe9-8630-4744c3626534]6OffsetArrays [6fe1bfb0-de20-5000-8ca7-80f57d26f881]7StackViews [cae243ae-269e-4f55-b966-ac2d0dc13c15]Unicode [4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5]Base.PkgIdPaddedViews [5432bcbf-9aad-5242-b902-cca2824c8663]Base.PkgId1OffsetArrays [6fe1bfb0-de20-5000-8ca7-80f57d26f881]Requires [ae029012-a4dd-5104-9daa-d747884805df]Base.PkgId1UUIDs [cf7118a7-6976-5b1a-9a39-7adc72f591a4]FixedPointNumbers [53c48c17-4a7d-5ca2-90c5-79b7896eea93]Base.PkgId1Statistics [10745b16-79ce-11e8-11f9-7d13ad32a3b2]NetworkOptions [ca575930-c2e3-43a9-ace4-1e988b2c1908]Base.PkgIdColorSchemes [35d6a980-a343-548e-a6ea-1d62b119f2f4]Base.PkgId1ColorTypes [3da002f7-5984-5a60-b8a6-cbb66c0b333f]2ColorVectorSpace [c3611d14-8923-5661-9e6a-0046d554d3a4]3Colors [5ae59095-9a9b-59fe-a467-6f913c188581]4FixedPointNumbers [53c48c17-4a7d-5ca2-90c5-79b7896eea93]5PrecompileTools [aea7be01-6a6a-4083-8856-8a6e6704d82a]LibGit2_jll [e37daf67-58a4-590a-8e99-b0245dd2ffc5]Base.PkgId1LibSSH2_jll [29816b5a-b9ab-546f-933c-edad1886dfa8]2MbedTLS_jll [c8ffd9c3-330d-5841-b78e-0817d7145fa1]MosaicViews [e94cdb99-869f-56ef-bcf0-1ae2bcbe0389]Base.PkgId1MappedArrays [dbb5928d-eab1-5f90-85c2-b9b0edb7c900]2OffsetArrays [6fe1bfb0-de20-5000-8ca7-80f57d26f881]3PaddedViews [5432bcbf-9aad-5242-b902-cca2824c8663]4StackViews [cae243ae-269e-4f55-b966-ac2d0dc13c15]UUIDs [cf7118a7-6976-5b1a-9a39-7adc72f591a4]Base.PkgIdReexport [189a3867-3050-52da-a836-e630ba90ab69]Base.PkgIdLogging [56ddb016-857b-54e1-b83d-db4d58db5568]Base.PkgIdMbedTLS_jll [c8ffd9c3-330d-5841-b78e-0817d7145fa1]Base.PkgIdZlib_jll [83775a58-1f1d-513f-b197-d71354ab007a]Base.PkgIdPrintf [de0858da-6303-5e67-8744-51eddeeeb8d7]Base.PkgId1Unicode [4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5]ArgTools [0dad84c5-d112-42e6-8d28-ef12dabb789f]Base.PkgIdStatistics [10745b16-79ce-11e8-11f9-7d13ad32a3b2]Base.PkgIdBase64 [2a0f44e3-6c83-55bd-87e4-b1978d98bd5f]Base.PkgIdMarkdown [d6f4376e-aef5-505a-96c1-9c027394607a]Base.PkgId1Base64 [2a0f44e3-6c83-55bd-87e4-b1978d98bd5f]TensorCore [62fd8b95-f654-4bbd-a8a5-9c27f68ccd50]Base.PkgIdPrecompileTools [aea7be01-6a6a-4083-8856-8a6e6704d82a]Base.PkgId1Preferences [21216c6a-2e73-6563-6e65-726566657250]MozillaCACerts_jll [14a3606d-f60d-562e-9121-12d972cd8159]Base.PkgIdLibCURL_jll [deac9b47-8bc7-5906-a0fe-35ac56dc84c0]Base.PkgId1LibSSH2_jll [29816b5a-b9ab-546f-933c-edad1886dfa8]2MbedTLS_jll [c8ffd9c3-330d-5841-b78e-0817d7145fa1]3Zlib_jll [83775a58-1f1d-513f-b197-d71354ab007a]4nghttp2_jll [8e850ede-7688-5339-a07c-302acd2aaf8d]TOML [fa267f1f-6049-4f14-aa54-33bafae1ed76]Base.PkgId1Dates [ade2ca70-3891-5945-98fb-dc099432e06a]Tar [a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e]Base.PkgId1ArgTools [0dad84c5-d112-42e6-8d28-ef12dabb789f]LibGit2 [76f85450-5226-5b5a-8eaa-529ad045b433]Base.PkgId1Base64 [2a0f44e3-6c83-55bd-87e4-b1978d98bd5f]2LibGit2_jll [e37daf67-58a4-590a-8e99-b0245dd2ffc5]3NetworkOptions [ca575930-c2e3-43a9-ace4-1e988b2c1908]4Printf [de0858da-6303-5e67-8744-51eddeeeb8d7]LibSSH2_jll [29816b5a-b9ab-546f-933c-edad1886dfa8]Base.PkgId1MbedTLS_jll [c8ffd9c3-330d-5841-b78e-0817d7145fa1]nghttp2_jll [8e850ede-7688-5339-a07c-302acd2aaf8d]Base.PkgIdplusdirect_depsBase.PkgId1FileIO [5789e2e9-d7fb-5bc7-8068-2c6fae9b9549]2ColorVectorSpace [c3611d14-8923-5661-9e6a-0046d554d3a4]3ImageIO [82e4d734-157c-48bb-816b-45c225c6df19]4PlutoUI [7f904dfe-b85e-4ff6-b463-dae2292396a8]5HypertextLiteral [ac1192a8-f4b3-4bfe-ba22-af5b92cd3ab2]6Colors [5ae59095-9a9b-59fe-a467-6f913c188581]7ImageShow [4e3cecfd-b093-5904-9786-8bbb286a6a31]8PlutoTeachingTools [661c6b06-c737-4d37-b85c-46df65de6f69] Rejecting cache file /Users/fons/.julia/compiled/v1.11/PrecompileTools/AQ9Mk_J6KzS.ji because module Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") is already loaded and incompatible. Rejecting cache file /Users/fons/.julia/compiled/v1.11/ImageCore/cqNLm_J6KzS.ji because module Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") is already loaded and incompatible. Rejecting cache file /Users/fons/.julia/compiled/v1.11/ColorSchemes/EO5fj_J6KzS.ji because module Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") is already loaded and incompatible. Rejecting cache file /Users/fons/.julia/compiled/v1.11/ImageBase/kFbbd_J6KzS.ji because module Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") is already loaded and incompatible. Rejecting cache file /Users/fons/.julia/compiled/v1.11/ImageShow/76qZM_J6KzS.ji because module Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") is already loaded and incompatible.

This makes me thing that the issue is two different versions of Preferences: the one used in the precompilation process (from the notebook Manifest), and the one already loaded in the notebook boot environment.

fonsp avatar Sep 18 '25 10:09 fonsp

Boot env:

➜  pluto-boot-environment-1.11.7-0.20.18 cat Manifest.toml 
# This file is machine-generated - editing it directly is not advised

julia_version = "1.11.7"
manifest_format = "2.0"
project_hash = "5d9d4852b49e14f7fb2dc6b9ffa9bdd20701fdf4"

[[deps.ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.2"

[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
version = "1.11.0"

[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
version = "1.11.0"

[[deps.Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
version = "1.11.0"

[[deps.Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
version = "1.11.0"

[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0"

[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
version = "1.11.0"

[[deps.InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
version = "1.11.0"

[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
version = "0.6.4"

[[deps.LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
version = "8.6.0+0"

[[deps.LibGit2]]
deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
version = "1.11.0"

[[deps.LibGit2_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
version = "1.7.2+0"

[[deps.LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
version = "1.11.0+1"

[[deps.Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
version = "1.11.0"

[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
version = "1.11.0"

[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
version = "1.11.0"

[[deps.MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.28.6+0"

[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2023.12.12"

[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"

[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
version = "1.11.0"
weakdeps = ["REPL"]

    [deps.Pkg.extensions]
    REPLExt = "REPL"

[[deps.PlutoRunner]]
deps = ["Base64", "Dates", "Distributed", "InteractiveUtils", "Logging", "Markdown", "Pkg", "PrecompileTools", "REPL", "Sockets", "UUIDs"]
path = "/Users/fons/Documents/Pluto.jl/src/runner/PlutoRunner"
uuid = "dc6b355a-2368-4481-ae6d-ae0351418d79"
version = "29.14.98"

[[deps.PrecompileTools]]
deps = ["Preferences"]
git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f"
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
version = "1.2.1"

[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "0f27480397253da18fe2c12a4ba4eb9eb208bf3d"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.5.0"

[[deps.Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
version = "1.11.0"

[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
version = "1.11.0"

[[deps.Random]]
deps = ["SHA"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
version = "1.11.0"

[[deps.SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
version = "0.7.0"

[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
version = "1.11.0"

[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
version = "1.11.0"

[[deps.StyledStrings]]
uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b"
version = "1.11.0"

[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
version = "1.0.3"

[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.0"

[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
version = "1.11.0"

[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
version = "1.11.0"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.13+1"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.59.0+0"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"

So:


[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "0f27480397253da18fe2c12a4ba4eb9eb208bf3d"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.5.0"

Notebook Manifest:

PLUTO_MANIFEST_TOML_CONTENTS = """
# This file is machine-generated - editing it directly is not advised

julia_version = "1.11.3"
manifest_format = "2.0"
project_hash = "a2ff167c7140b17bb8fcfd00c83b168053ec3919"

[[deps.AbstractPlutoDingetjes]]
deps = ["Pkg"]
git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a"
uuid = "6e696c72-6542-2067-7265-42206c756150"
version = "1.3.2"

[[deps.ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.2"

[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
version = "1.11.0"

[[deps.AxisArrays]]
deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"]
git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f"
uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9"
version = "0.4.7"

[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
version = "1.11.0"

[[deps.CEnum]]
git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.5.0"

[[deps.ColorSchemes]]
deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e"
uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
version = "3.29.0"

[[deps.ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d"
uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
version = "0.11.5"

[[deps.ColorVectorSpace]]
deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"]
git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249"
uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4"
version = "0.10.0"

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[[deps.SimpleTraits]]
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git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231"
uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d"
version = "0.9.4"

[[deps.Sixel]]
deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"]
git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6"
uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47"
version = "0.1.3"

[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
version = "1.11.0"

[[deps.StackViews]]
deps = ["OffsetArrays"]
git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c"
uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15"
version = "0.1.1"

[[deps.Statistics]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0"
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
version = "1.11.1"

    [deps.Statistics.extensions]
    SparseArraysExt = ["SparseArrays"]

    [deps.Statistics.weakdeps]
    SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[deps.StyledStrings]]
uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b"
version = "1.11.0"

[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
version = "1.0.3"

[[deps.Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.0"

[[deps.TensorCore]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6"
uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50"
version = "0.1.1"

[[deps.Test]]
deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
version = "1.11.0"

[[deps.TiffImages]]
deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"]
git-tree-sha1 = "f21231b166166bebc73b99cea236071eb047525b"
uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
version = "0.11.3"

[[deps.Tricks]]
git-tree-sha1 = "6cae795a5a9313bbb4f60683f7263318fc7d1505"
uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775"
version = "0.1.10"

[[deps.URIs]]
git-tree-sha1 = "cbbebadbcc76c5ca1cc4b4f3b0614b3e603b5000"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.5.2"

[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
version = "1.11.0"

[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
version = "1.11.0"

[[deps.WebP]]
deps = ["CEnum", "ColorTypes", "FileIO", "FixedPointNumbers", "ImageCore", "libwebp_jll"]
git-tree-sha1 = "aa1ca3c47f119fbdae8770c29820e5e6119b83f2"
uuid = "e3aaa7dc-3e4b-44e0-be63-ffb868ccd7c1"
version = "0.1.3"

[[deps.XZ_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "fee71455b0aaa3440dfdd54a9a36ccef829be7d4"
uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.8.1+0"

[[deps.Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
git-tree-sha1 = "b5899b25d17bf1889d25906fb9deed5da0c15b3b"
uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc"
version = "1.8.12+0"

[[deps.Xorg_libXau_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "aa1261ebbac3ccc8d16558ae6799524c450ed16b"
uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
version = "1.0.13+0"

[[deps.Xorg_libXdmcp_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "52858d64353db33a56e13c341d7bf44cd0d7b309"
uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
version = "1.1.6+0"

[[deps.Xorg_libXext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
git-tree-sha1 = "a4c0ee07ad36bf8bbce1c3bb52d21fb1e0b987fb"
uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3"
version = "1.3.7+0"

[[deps.Xorg_libxcb_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"]
git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422"
uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
version = "1.17.1+0"

[[deps.Xorg_xtrans_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.6.0+0"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.13+1"

[[deps.Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.7+1"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.11.0+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
git-tree-sha1 = "002748401f7b520273e2b506f61cab95d4701ccf"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.48+0"

[[deps.libsixel_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
git-tree-sha1 = "c1733e347283df07689d71d61e14be986e49e47a"
uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
version = "1.10.5+0"

[[deps.libwebp_jll]]
deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"]
git-tree-sha1 = "d2408cac540942921e7bd77272c32e58c33d8a77"
uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
version = "1.5.0+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.59.0+0"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"
"""

So:

[[deps.Preferences]]
deps = ["TOML"]
git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.4.3"

fonsp avatar Sep 18 '25 10:09 fonsp

I think a clean solution requires the precompilation to happen with the same environment setup as the notebook process.

It's currently in a separate process to make the IO capture easier.

Best would be to just do it in the notebook process, this also reduces resource use (good for binder). But then I need to figure out how to capture IO...

Another option is to load PlutoRunner first in the precomp process..... but I dont like that

~This might also make it possible to interrupt precomp~ Oooooh this means that if you shut down the notebook process it will stop precomp! That's great.

fonsp avatar Sep 18 '25 11:09 fonsp

This notebook is still precompiling twice in Julia 1.11.7

https://github.com/bmlip/course/blob/2bdd44fcab1b6bfa83a058f8c8950d96b82e7a23/probprog/PP2%20-%20Bayesian%20regression%20and%20classification

fonsp avatar Sep 24 '25 09:09 fonsp

Maybe modify the loadpath to include the boot env during precomp

fonsp avatar Sep 24 '25 09:09 fonsp

And maybe remove PrecompTools

fonsp avatar Sep 24 '25 09:09 fonsp

Maybe modify the loadpath to include the boot env during precomp

Omg this workeD!!!!

fonsp avatar Sep 25 '25 14:09 fonsp

Still broken 🥲

fonsp avatar Sep 26 '25 14:09 fonsp

in the Continuous Data and the Gaussian Distribution lecture on Julia 1.11

https://raw.githubusercontent.com/bmlip/course/2bdd44fcab1b6bfa83a058f8c8950d96b82e7a23/lectures/The%20Gaussian%20Distribution.jl

fonsp avatar Sep 26 '25 14:09 fonsp