Issue with IPython

[springcoil]

Hi Fisadev, I get the following issue, not sure if it is an IPython issue or not.

Here is the traceback - it happens on the first cell of the IPython notebook

ImportError Traceback (most recent call last) in () 4 import pygal 5 ----> 6 from pybrain.structure import FeedForwardNetwork, LinearLayer, SigmoidLayer, FullConnection 7 from pybrain.tools.shortcuts import buildNetwork 8 from pybrain.supervised.trainers import BackpropTrainer

/home/peadar/.virtualenvs/world_cup/src/pybrain/pybrain/init.py in () ----> 1 from pybrain.structure.init import *

/home/peadar/.virtualenvs/world_cup/src/pybrain/pybrain/structure/init.py in () ----> 1 from pybrain.structure.connections.init import * 2 from pybrain.structure.modules.init import * 3 from pybrain.structure.networks.init import * 4 from pybrain.structure.modulemesh import ModuleMesh

/home/peadar/.virtualenvs/world_cup/src/pybrain/pybrain/structure/connections/init.py in () ----> 1 from pybrain.structure.connections.full import FullConnection 2 from pybrain.structure.connections.identity import IdentityConnection 3 from pybrain.structure.connections.shared import SharedFullConnection, MotherConnection, SharedConnection 4 from pybrain.structure.connections.linear import LinearConnection 5 from pybrain.structure.connections.fullnotself import FullNotSelfConnection

/home/peadar/.virtualenvs/world_cup/src/pybrain/pybrain/structure/connections/full.py in () 1 author = 'Tom Schaul, [email protected]' 2 ----> 3 from scipy import reshape, dot, outer 4 5 from pybrain.structure.connections.connection import Connection

/home/peadar/.virtualenvs/world_cup/lib/python2.7/site-packages/scipy/init.py in () 68 all = ['test'] 69 ---> 70 from numpy import show_config as show_numpy_config 71 if show_numpy_config is None: 72 raise ImportError("Cannot import scipy when running from numpy source directory.")

/home/peadar/.virtualenvs/world_cup/lib/python2.7/site-packages/numpy/init.py in () 151 return loader(_packages, *_options) 152 --> 153 from . import add_newdocs 154 all = ['add_newdocs', 'ModuleDeprecationWarning'] 155

/home/peadar/.virtualenvs/world_cup/lib/python2.7/site-packages/numpy/add_newdocs.py in () 11 from future import division, absolute_import, print_function 12 ---> 13 from numpy.lib import add_newdoc 14 15 ###############################################################################

/home/peadar/.virtualenvs/world_cup/lib/python2.7/site-packages/numpy/lib/init.py in () 15 from .ufunclike import * 16 ---> 17 from . import scimath as emath 18 from .polynomial import * 19 #import convertcode

ImportError: cannot import name scimath

I am trying to improve your requirements.txt file inside a virtual environment

pip freeze gives the following.

Jinja2==2.7.2 Markdown==2.4 MarkupSafe==0.23 MySQL-python==1.2.5 -e git+https://github.com/pybrain/pybrain.git@1dd5086a51c3c98497ef85b31178588a89d8951e#egg=PyBrain-master PyYAML==3.11 Pygments==1.6 SQLAlchemy==0.9.4 Sphinx==1.2.2 StarCluster==0.95.5 Werkzeug==0.9.4 argparse==1.2.1 backports.ssl-match-hostname==3.4.0.2 boto==2.29.1 brewer2mpl==1.4 colorama==0.2.5 csvkit==0.7.3 dbf==0.94.003 decorator==3.4.0 dill==0.2b1 docutils==0.11 ecdsa==0.11 gevent==1.0 gevent-websocket==0.9.3 greenlet==0.4.2 httplib2==0.9 ipdb==0.8 iptools==0.6.1 ipython==2.0.0 iso8601==0.1.10 itsdangerous==0.24 jdcal==1.0 lxml==3.3.5 matplotlib==1.3.1 mock==1.0.1 mpld3==0.1 nose==1.3.3 numpy==1.8.1 numpydoc==0.4 openpyxl==1.8.0 optcomplete==1.2-devel pandas==0.14.0 paramiko==1.14.0 progressbar==2.2 psycopg2==2.5.3 pycrypto==2.6.1 pygal==1.4.6 pyparsing==2.0.2 python-dateutil==2.2 python-gflags==2.0 pytz==2014.4 pyzmq==14.3.0 scikit-learn==0.14.1 scimath==4.1.2 scipy==0.14.0 scp==0.8.0 six==1.7.2 tornado==3.2.2 traits==4.5.0 websocket==0.2.1 websocket-client==0.12.0 workerpool==0.9.2 wsgiref==0.1.2 xlrd==0.9.3

[springcoil]

Yet it works if I install pybrain manually using. git clone git://github.com/pybrain/pybrain.git and python setup.py install

[fisadev]

How did you install scipy, numpy and pandas?

[fisadev]

Also, I've just updated the requirements, now they install everything needed (also removed old unneded dependencies), and the README with some extra installation instructions. Can you try with them (in a clean new virtualenv)?